JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGAP3_chr17_39666122_39693057	0/0	c0011	963	1	0	0	1	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0012	963	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0013	963	1	1	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	c0014	963	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP4_chr9_101468170_101492173	1/0	c0001	1212	404	80	63	214	10	36	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/1	c0002	1212	23	0	13	3	2	4	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	c0003	1212	20	6	10	0	2	2	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	c0004	1212	5	5	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	c0005	1212	5	0	0	5	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	c0006	1212	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	c0007	1212	1	0	0	0	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	c0008	1212	1	0	0	0	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP6_chr16_365788_386978	1/1	c0001	2316	149	20	36	75	4	12	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0002	2316	106	24	24	35	6	17	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0003	2316	46	2	6	18	4	16	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0004	2316	13	13	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0005	2316	9	6	3	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0006	2316	9	5	2	1	1	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0007	2316	9	9	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0008	2316	6	5	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0009	2316	4	4	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0010	2316	2	2	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0011	2316	2	0	0	0	0	2	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0012	2306	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0013	2316	1	0	0	0	0	1	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0014	2316	1	0	0	0	1	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0015	2316	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0016	2316	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0017	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0018	2316	1	0	0	0	0	1	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0019	2316	1	0	0	0	0	1	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0020	2316	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0021	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0022	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0023	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0024	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0025	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0026	2316	1	0	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0027	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0028	2316	1	0	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0029	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0030	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0031	2316	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	c0032	2316	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGBD1_chr6_28276572_28307549	1/0	c0001	2430	126	3	28	67	7	20	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0002	2430	80	7	12	57	0	4	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0003	2430	80	41	10	26	0	3	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/1	c0004	2430	43	22	5	5	4	6	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0005	2430	38	5	8	21	1	3	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0006	2430	26	10	1	12	1	2	copy fasta	PGBD1	chr6	28276572	28307549