JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGBD1_chr6_28276572_28307549	0/0	c0007	2430	5	0	4	0	1	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0008	2430	2	1	1	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0009	2430	1	0	0	0	0	1	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0010	2430	1	0	0	1	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0011	2430	1	0	0	1	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0012	2430	1	0	0	0	0	1	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0013	2430	1	1	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0014	2430	1	1	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0015	2430	1	0	1	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	c0016	2430	1	1	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD2_chr1_248901235_248924146	1/1	c0001	1779	336	80	62	143	12	37	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0002	1779	30	0	0	27	0	3	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0003	1779	22	0	2	17	1	2	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0004	1779	14	13	1	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0005	1779	6	6	0	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0006	1779	3	0	0	3	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0007	1779	3	0	0	3	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0008	1779	2	0	0	2	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0009	1779	1	0	0	1	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0010	1779	1	0	0	0	1	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0011	1779	1	1	0	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0012	1779	1	0	0	1	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0013	1779	1	0	0	1	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	c0014	1779	1	0	1	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD4_chr15_34097083_34113686	1/1	c0001	1758	379	79	70	175	12	41	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	c0002	1758	10	9	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	c0003	1758	8	8	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	c0004	1758	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	c0005	1758	1	0	0	0	0	1	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	c0006	1758	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD5_chr1_230309490_230431332	1/1	c0001	1575	186	59	35	56	5	29	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0002	1575	79	5	15	50	2	7	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0003	1575	6	0	1	0	1	4	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0004	1575	3	2	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0005	1575	3	3	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0006	1575	3	3	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0007	1575	2	0	1	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0008	1575	2	2	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0009	1554	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0010	1575	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0011	1575	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	c0012	1575	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGC_chr6_41731711_41752397	1/1	c0001	1167	451	91	84	206	18	50	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	c0002	1167	5	5	0	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	c0003	1167	3	2	1	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	c0004	1167	1	1	0	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	c0005	1177	1	0	1	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	c0006	1167	1	0	0	1	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	c0007	1167	1	0	0	1	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	c0008	1167	1	1	0	0	0	0	copy fasta	PGC	chr6	41731711	41752397