JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGD_chr1_10394064_10425511	1/1	c0001	1452	224	48	38	94	10	32	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0002	1452	110	10	21	60	4	15	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0003	1452	23	6	7	9	0	1	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0004	1452	21	20	1	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0005	1452	5	0	0	5	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0006	1452	3	3	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0007	1452	1	1	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0008	1452	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0009	1452	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0010	1452	1	0	1	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0011	1452	1	1	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0012	1452	1	1	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0013	1452	1	1	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	c0014	1452	1	1	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGF_chr14_74936834_74960597	1/1	c0001	513	406	96	74	178	16	40	copy fasta	PGF	chr14	74936834	74960597
PGGHG_chr11_284126_301107	1/0	c0001	2214	165	23	28	102	2	9	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0002	2214	92	13	11	61	2	5	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0003	2214	65	8	3	39	0	15	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/1	c0004	2214	55	31	15	0	6	2	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0005	2214	40	12	15	0	6	7	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0006	2214	4	1	0	2	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0007	2214	4	0	0	3	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0008	2214	4	4	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0009	2214	2	0	2	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0010	2214	2	0	0	2	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0011	2214	2	0	2	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0012	2214	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0013	2214	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0014	2214	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0015	2214	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0016	2214	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0017	2214	1	0	0	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0018	2214	1	0	0	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0019	2214	1	0	0	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0020	2214	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0021	2214	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0022	2214	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0023	2214	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0024	2214	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0025	2214	1	0	0	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	c0026	2214	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGT1B_chr5_115199012_115267877	1/1	c0001	1134	349	85	73	134	16	39	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	c0002	1134	16	0	1	15	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	c0003	1134	4	3	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	c0004	1134	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	c0005	1134	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	c0006	1134	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGK1_chrX_78099248_78134295	1/1	c0001	1254	304	72	51	140	8	31	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	c0002	1254	1	0	0	0	0	1	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	c0003	1258	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295