JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGK1_chrX_78099248_78134295	0/0	c0004	1254	1	0	1	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	c0005	1254	1	0	0	0	1	0	copy fasta	PGK1	chrX	78099248	78134295
PGK2_chr6_49780660_49792285	1/1	c0001	1254	390	90	72	165	17	44	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0002	1254	3	2	0	1	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0003	1254	3	2	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0004	1254	1	0	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0005	1254	1	0	0	0	0	1	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0006	1254	1	0	0	0	1	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0008	1254	1	0	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0009	1254	1	0	0	1	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0010	1254	1	1	0	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0011	1254	1	0	0	0	0	1	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0012	1254	1	0	0	1	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	c0013	1254	1	0	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGLS_chr19_17506649_17526288	1/1	c0001	777	172	14	27	100	9	20	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0002	777	137	18	28	63	8	20	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0003	777	116	60	22	26	1	7	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0004	777	10	0	0	9	0	1	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0005	777	3	3	0	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0006	777	1	0	0	1	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0007	777	1	0	1	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0008	777	1	1	0	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	c0009	777	1	0	0	1	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLYRP1_chr19_46014153_46028053	1/1	c0001	591	420	74	74	205	17	48	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	c0002	591	19	14	5	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	c0003	591	10	0	0	10	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	c0004	591	2	2	0	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	c0005	591	2	2	0	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	c0006	591	1	0	1	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	c0007	591	1	0	0	0	1	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	c0008	591	1	0	0	1	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP2_chr19_15463645_15484501	1/1	c0001	1731	200	41	41	80	8	28	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0002	1731	65	9	11	40	2	3	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0003	1731	40	14	8	9	5	4	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0004	1731	18	1	8	3	3	3	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0005	1731	15	15	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0006	1731	9	0	0	9	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0007	1731	5	2	0	0	0	3	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0008	1731	5	5	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0009	1731	5	5	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0010	1731	3	3	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0011	1731	2	0	0	2	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0012	1731	2	2	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0013	1731	2	0	0	2	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0014	1731	1	1	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0015	1731	1	1	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0016	1731	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0017	1731	1	0	0	0	0	1	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0018	1759	1	0	0	1	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501