JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGLYRP2_chr19_15463645_15484501	0/0	c0019	1731	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0020	1731	1	0	0	1	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0021	1731	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0022	1731	1	0	0	1	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0023	1731	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	c0024	1731	1	1	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP3_chr1_153292116_153317952	0/1	c0001	1026	193	23	37	103	9	20	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	1/0	c0002	1026	157	41	33	52	6	24	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0003	1026	37	0	4	33	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0004	1026	7	1	3	0	1	2	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0005	1026	6	6	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0006	1026	6	5	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0007	1026	4	4	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0008	1026	3	3	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0009	1026	3	3	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0010	1026	3	3	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0011	1026	3	0	0	3	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0012	1026	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0013	1026	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0014	1026	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0015	1026	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0016	1026	1	0	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0017	1026	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0018	1026	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0019	1026	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0020	1026	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	c0021	1026	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP4_chr1_153325120_153353841	0/0	c0001	1122	270	63	52	112	13	30	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0002	1122	35	3	0	32	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	1/0	c0003	1122	34	1	3	19	0	10	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0004	1122	19	13	3	0	1	2	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0005	1122	9	0	0	9	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0006	1122	4	0	0	4	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0007	1122	4	4	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0008	1122	3	3	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/1	c0009	1122	3	0	2	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0010	1122	3	3	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0011	1122	2	0	0	2	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0012	1122	2	2	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0013	1122	2	0	0	2	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	c0014	1122	2	0	0	0	2	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGM1_chr1_63588411_63665245	1/1	c0001	1689	177	26	27	93	2	27	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0002	1689	57	2	9	35	5	6	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0003	1689	33	5	13	12	2	1	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0004	1689	19	4	7	8	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0005	1689	19	10	6	0	1	2	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0006	1689	10	7	3	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0007	1689	10	10	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0008	1689	7	0	0	7	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0009	1689	5	5	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245