JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGM1_chr1_63588411_63665245	0/0	c0010	1689	5	5	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0011	1689	4	2	0	1	0	1	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0012	1689	4	0	0	4	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0013	1689	2	2	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0014	1689	2	2	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0015	1689	2	2	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0016	1689	2	1	1	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0017	1689	1	1	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0018	1689	1	1	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0019	1689	1	0	1	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0020	1689	1	0	0	1	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0021	1689	1	0	0	1	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0022	1689	1	1	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0023	1689	1	0	0	0	0	1	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	c0024	1689	1	0	1	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM2L1_chr11_74325316_74403433	0/1	c0001	1869	123	16	21	62	6	17	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	1/0	c0002	1869	94	19	13	50	3	8	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0003	1869	86	5	7	63	3	8	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0004	1869	57	45	5	5	0	2	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0005	1869	7	1	2	0	0	4	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0006	1869	3	3	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0007	1869	3	0	0	3	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0008	1869	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0009	1869	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0010	1869	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0011	1869	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0012	1869	1	0	0	0	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0013	1869	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	c0014	1869	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2_chr4_37821686_37867937	1/1	c0001	1839	285	24	43	169	16	31	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0002	1839	55	20	6	25	2	2	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0003	1839	43	16	9	17	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0004	1839	27	21	3	0	0	3	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0005	1839	6	1	3	1	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0006	1839	6	1	0	5	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0007	1839	5	3	0	2	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0008	1839	3	0	0	3	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0009	1839	2	0	0	2	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0010	1839	2	2	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0011	1839	2	0	0	0	0	2	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0012	1839	2	0	2	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0013	1839	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0014	1839	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0015	1839	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0016	1839	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0017	1804	1	0	0	1	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0018	1839	1	0	0	1	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0019	1839	1	0	0	0	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	c0020	1839	1	0	0	0	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM3_chr6_83159873_83198265	1/0	c0001	1629	180	40	41	63	8	27	copy fasta	PGM3	chr6	83159873	83198265