JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGM3_chr6_83159873_83198265	0/1	c0002	1629	151	38	19	74	4	15	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	c0003	1629	9	9	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	c0004	1629	1	0	0	1	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	c0005	1629	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	c0006	1629	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	c0007	1629	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM5_chr9_68351611_68536061	1/0	c0001	1704	148	43	21	55	7	21	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/1	c0002	1704	55	5	17	26	3	3	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0003	1704	10	2	2	4	2	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0004	1704	7	6	1	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0005	1704	6	5	1	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0006	1704	3	3	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0007	1704	2	2	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0008	1704	2	2	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0009	1704	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0010	1704	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0011	1704	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0012	1704	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0013	1704	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0014	1704	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0015	1704	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0016	1704	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0017	1704	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0018	1704	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0019	1704	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0020	1704	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	c0021	1704	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGPEP1L_chr15_98963229_99012792	1/0	c0001	429	184	78	26	64	3	12	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/1	c0002	430	166	12	32	92	4	25	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0003	429	34	3	8	10	6	7	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0004	429	6	1	2	3	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0005	430	2	0	1	0	1	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0006	429	2	0	2	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0007	429	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0008	429	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0009	429	1	0	1	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	c0010	430	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1_chr19_18335598_18374950	1/1	c0001	630	410	95	80	169	18	46	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	c0002	630	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	c0003	630	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGP_chr16_2206593_2219840	1/0	c0001	966	425	84	76	199	16	49	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/1	c0002	966	11	0	8	0	1	1	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	c0003	966	11	10	1	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	c0004	966	2	2	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	c0005	966	1	0	1	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	c0006	966	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	c0007	966	1	0	0	0	1	0	copy fasta	PGP	chr16	2206593	2219840
PGRMC1_chrX_119231285_119249466	1/1	c0001	588	259	68	53	94	13	29	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC1_chrX_119231285_119249466	0/0	c0002	588	2	2	0	0	0	0	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC1_chrX_119231285_119249466	0/0	c0003	588	2	0	0	2	0	0	copy fasta	PGRMC1	chrX	119231285	119249466