JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PGRMC1_chrX_119231285_119249466	0/0	c0004	587	1	0	0	1	0	0	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC2_chr4_128264242_128292813	1/1	c0001	672	409	93	78	180	18	38	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	c0002	672	25	0	0	25	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	c0003	672	1	1	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	c0004	672	1	0	0	1	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGR_chr11_101024624_101134813	1/0	c0001	2802	101	31	19	28	3	19	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0002	2802	58	18	9	26	2	3	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/1	c0003	2802	38	4	18	2	7	6	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0004	2802	14	1	9	0	3	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0005	2802	14	13	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0006	2802	8	7	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0007	2802	3	0	2	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0008	2802	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0009	2802	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0010	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0011	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0012	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0013	2802	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0014	2802	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0015	2802	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0016	2802	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0017	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0018	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0019	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0020	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0021	2802	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0022	2780	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0023	2802	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	c0024	2802	1	0	0	0	1	0	copy fasta	PGR	chr11	101024624	101134813
PGS1_chr17_78373649_78429659	0/0	c0001	1671	198	44	36	80	11	27	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	1/1	c0002	1671	168	28	36	80	5	17	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0003	1671	15	13	2	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0004	1671	5	5	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0005	1671	3	0	0	3	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0006	1671	2	0	0	2	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0007	1671	1	0	1	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0008	1671	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0009	1671	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0010	1671	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0011	1671	1	0	1	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0012	1671	1	1	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	c0013	1671	1	1	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PHACTR1_chr6_12711767_13292837	0/0	c0001	1743	99	60	26	7	2	4	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	c0002	1743	7	6	0	1	0	0	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	c0003	1743	2	2	0	0	0	0	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR2_chr6_143672965_143836185	1/0	c0001	1938	144	32	33	51	5	22	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0002	1938	74	28	18	20	5	3	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/1	c0003	1938	72	25	8	35	2	1	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0004	1938	3	3	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0005	1938	3	0	0	2	0	1	copy fasta	PHACTR2	chr6	143672965	143836185