JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHACTR2_chr6_143672965_143836185	0/0	c0006	1938	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0007	1938	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0008	1938	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0009	1938	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0010	1938	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0011	1938	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0012	1938	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0013	1938	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0014	1938	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0015	1938	1	0	0	0	0	1	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0016	1938	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0017	1938	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0018	1938	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	c0019	1938	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR3_chr20_59599540_59852711	1/1	c0001	1680	239	58	54	83	6	36	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	c0002	1680	3	0	0	3	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	c0003	1680	2	1	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	c0004	1680	2	0	0	2	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	c0005	1680	1	1	0	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	c0006	1680	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	c0007	1680	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	c0008	1680	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR4_chr1_28364740_28505364	1/1	c0001	2109	96	24	29	25	4	12	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0002	2109	84	27	24	14	7	12	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0003	2109	26	20	4	0	1	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0004	2109	10	1	1	3	4	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0005	2109	5	4	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0006	2109	2	2	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0007	2109	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0008	2109	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0009	2109	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0010	2109	1	0	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	c0011	2109	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHAF1_chr16_67104941_67153544	1/1	c0001	1269	226	91	29	70	10	24	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	c0002	1269	2	0	1	0	0	1	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	c0003	1269	1	1	0	0	0	0	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	c0004	1269	1	0	0	0	0	1	copy fasta	PHAF1	chr16	67104941	67153544
PHAX_chr5_126595947_126632252	1/1	c0001	1185	297	71	53	125	10	36	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	c0002	1185	64	0	5	51	4	4	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	c0003	1185	15	14	1	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	c0004	1185	2	2	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	c0005	1185	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	c0006	1185	1	0	0	0	0	1	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	c0007	1185	1	0	0	0	0	1	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	c0008	1185	1	0	1	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHB1_chr17_49399052_49419882	1/1	c0001	819	436	90	78	207	15	44	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	c0002	819	4	2	2	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	c0003	819	1	0	0	0	1	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	c0004	819	1	0	0	1	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB2_chr12_6960327_6975664	1/1	c0001	900	361	93	70	143	12	41	copy fasta	PHB2	chr12	6960327	6975664