JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHB2_chr12_6960327_6975664	0/0	c0002	900	15	1	0	14	0	0	copy fasta	PHB2	chr12	6960327	6975664
PHB2_chr12_6960327_6975664	0/0	c0003	900	1	0	0	0	0	1	copy fasta	PHB2	chr12	6960327	6975664
PHB2_chr12_6960327_6975664	0/0	c0004	900	1	0	0	1	0	0	copy fasta	PHB2	chr12	6960327	6975664
PHC1_chr12_8909509_8946467	0/0	c0001	3015	125	9	26	76	6	8	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0002	3015	87	34	11	41	1	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0003	3015	54	1	4	43	2	4	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0004	3015	33	5	14	3	2	9	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0005	3015	21	12	4	2	0	3	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0006	3015	14	3	5	0	0	6	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0007	3015	11	4	1	6	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0008	3009	6	6	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0009	3015	3	3	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0010	3015	2	2	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0011	3015	2	0	2	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0012	3015	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0013	3015	1	0	0	0	1	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0014	3015	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0015	3015	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0016	3015	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0017	3015	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0018	3015	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0019	3015	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0020	3015	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	c0021	3015	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC2_chr1_33318626_33436095	0/0	c0001	2580	104	40	6	42	2	14	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	1/1	c0002	2580	87	8	22	44	4	7	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0003	2580	67	0	8	53	0	6	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0004	2580	60	1	9	32	5	13	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0005	2580	31	18	4	7	0	2	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0006	2580	9	8	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0007	2580	3	0	1	0	1	1	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0008	2580	2	1	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0009	2580	1	0	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0010	2580	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0011	2580	1	0	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0012	2580	1	0	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0013	2580	1	0	0	0	0	1	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0014	2580	1	0	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	c0015	2580	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC3_chr3_170082584_170186733	1/1	c0001	2988	296	67	63	129	14	21	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0002	2988	18	0	0	17	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0003	2988	4	4	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0004	2988	3	3	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0005	2988	2	1	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0006	2988	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0007	2988	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0008	2988	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0009	2988	1	0	0	0	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0010	2988	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0011	2988	1	0	0	0	0	1	copy fasta	PHC3	chr3	170082584	170186733