JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHC3_chr3_170082584_170186733	0/0	c0012	2988	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0013	2988	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	c0014	2988	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHETA1_chr12_111355679_111374095	1/1	c0001	750	233	70	43	78	7	33	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0002	741	126	16	21	75	3	11	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0003	741	8	0	0	8	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0004	741	4	0	0	4	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0005	750	2	2	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0006	741	2	0	2	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0007	741	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0008	741	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0009	750	1	1	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0010	750	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	c0011	750	1	1	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA2_chr22_42069248_42084438	1/0	c0001	780	196	72	27	80	6	10	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	c0002	780	125	6	33	65	3	18	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/1	c0003	780	73	7	16	34	4	11	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	c0004	780	6	4	2	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	c0005	780	2	2	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	c0006	780	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	c0007	780	1	0	0	0	1	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	c0008	780	1	0	0	0	0	1	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	c0009	780	1	1	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHEX_chrX_22027325_22256310	1/1	c0001	2250	220	59	36	93	7	23	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	c0002	2250	3	2	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	c0003	2250	2	0	2	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	c0004	2250	2	2	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	c0005	2248	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	c0006	2250	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	c0007	2250	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	c0008	2250	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHF10_chr6_169698902_169729500	1/1	c0001	1497	363	90	63	171	10	27	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	c0002	1497	27	4	2	12	0	9	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	c0003	1497	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	c0004	1566	1	0	0	1	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	c0005	1497	1	0	1	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	c0006	1497	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF11_chr13_49490953_49533976	0/1	c0001	996	327	77	48	161	8	32	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	1/0	c0002	996	74	7	26	24	6	10	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	c0003	975	5	5	0	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	c0004	996	2	0	2	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	c0005	996	2	0	0	2	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	c0006	996	2	2	0	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	c0007	996	1	1	0	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	c0008	996	1	0	0	1	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF12_chr17_28900250_28956518	1/1	c0001	3015	218	73	42	69	8	24	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	c0002	3015	4	0	0	0	0	4	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	c0003	3015	2	0	2	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	c0004	3015	2	2	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	c0005	3015	2	2	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518