JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHF12_chr17_28900250_28956518	0/0	c0006	3015	1	0	1	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	c0007	3015	1	0	1	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	c0008	3015	1	1	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	c0009	3015	1	0	0	1	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF13_chr1_6608731_6629030	1/1	c0001	903	404	91	80	172	16	43	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	c0002	903	5	4	0	0	0	1	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	c0003	903	1	0	0	1	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	c0004	903	1	0	0	1	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	c0005	903	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF14_chr7_10968872_11174618	0/1	c0001	2846	189	62	33	72	4	17	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	1/0	c0002	2846	88	16	23	34	4	10	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0003	2846	7	6	1	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0004	2846	4	0	3	0	0	1	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0005	2846	3	3	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0006	2846	2	2	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0007	2846	2	0	2	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0008	2846	1	1	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0009	2846	1	1	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	c0010	2846	1	1	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF19_chr9_120850651_120882188	1/1	c0001	1743	391	87	64	189	14	35	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0002	1743	4	3	1	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0003	1743	3	1	2	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0004	1743	3	3	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0005	1743	2	2	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0006	1743	2	2	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0007	1743	1	0	0	1	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0008	1743	1	0	1	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	c0009	1743	1	0	0	0	0	1	copy fasta	PHF19	chr9	120850651	120882188
PHF1_chr6_33406014_33421439	0/0	c0001	1704	353	91	68	147	11	36	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	c0002	1704	4	4	0	0	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/1	c0003	1704	3	1	0	0	1	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	c0004	1704	1	0	0	1	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	c0005	1694	1	0	0	1	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	c0006	1704	1	0	0	1	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF20L1_chr8_132770388_132853807	1/1	c0001	3054	225	43	38	113	7	22	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0002	3054	123	39	27	37	7	13	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0003	3054	23	0	0	23	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0004	3054	8	0	3	4	0	1	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0005	3054	4	0	0	4	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0006	3054	3	0	0	3	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0007	3054	2	2	0	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0008	3054	1	0	1	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0009	3054	1	1	0	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0010	3054	1	1	0	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	c0011	3054	1	0	1	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20_chr20_35767015_35955370	1/1	c0001	3039	148	49	23	45	8	21	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0002	3039	37	6	10	14	2	5	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0003	3039	9	7	2	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0004	3039	3	3	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0005	3039	2	2	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370