JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHF20_chr20_35767015_35955370	0/0	c0006	3039	1	0	1	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0007	3039	1	0	0	1	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0008	3039	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0009	3039	1	0	0	1	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0010	3039	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0011	3039	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	c0012	3039	1	0	0	1	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF21A_chr11_45924319_46126454	1/1	c0001	2046	222	83	39	62	9	27	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	c0002	2046	56	1	11	41	1	2	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	c0003	2046	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	c0004	2046	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21B_chr22_44876162_45015005	1/0	c0001	1596	201	34	35	98	10	23	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0002	1596	45	29	8	0	0	8	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0003	1596	15	7	4	0	0	4	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0004	1596	7	3	1	3	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0005	1596	6	0	0	5	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0006	1596	6	5	0	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0007	1596	4	4	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0008	1596	3	0	0	3	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0009	1596	3	0	0	3	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/1	c0010	1596	2	0	0	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0011	1596	2	0	2	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0012	1596	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0013	1596	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0014	1596	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0015	1596	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0016	1596	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	c0017	1596	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF23_chr17_7230038_7244457	1/1	c0001	1212	372	82	70	163	17	38	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0002	1212	9	0	0	9	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0003	1212	6	6	0	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0004	1212	1	0	1	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0005	1212	1	1	0	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0006	1212	1	0	0	1	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0007	1212	1	1	0	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0008	1212	1	0	1	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0009	1212	1	0	0	0	1	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	c0010	1212	1	0	0	1	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF24_chr9_34953285_34987544	1/1	c0001	1203	436	84	79	207	16	48	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	c0002	1203	9	9	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	c0003	1203	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	c0004	1203	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	c0005	1203	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	c0006	1203	1	0	1	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	c0007	1203	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF2_chr9_93571584_93684587	0/0	c0001	3306	139	48	23	61	3	4	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	1/0	c0002	3291	115	7	26	61	6	14	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0003	3306	38	8	9	16	3	2	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/1	c0004	3306	12	0	6	3	2	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0005	3306	8	0	2	4	0	2	copy fasta	PHF2	chr9	93571584	93684587