JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHKA1_chrX_72573814_72719306	1/1	c0001	3672	222	60	32	97	5	26	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0002	3672	5	5	0	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0003	3672	2	2	0	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0004	3672	2	0	2	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0005	3672	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0006	3672	1	0	1	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0007	3671	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0008	3672	1	1	0	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0009	3668	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	c0010	3674	1	0	1	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA2_chrX_18887298_18989114	1/1	c0001	3708	171	49	22	76	4	18	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0002	3708	8	7	1	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0003	3708	4	3	1	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0004	3708	3	0	2	0	1	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0005	3708	2	2	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0006	3708	1	0	1	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0007	3708	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0008	3709	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0009	3708	1	0	1	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0010	3708	1	0	0	0	1	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0011	3708	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0012	3709	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0013	3708	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0014	3709	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0015	3708	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0016	3711	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0017	3708	1	0	0	0	1	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	c0018	3702	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKB_chr16_47456331_47706523	1/1	c0001	3282	66	46	7	3	2	6	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0002	3282	21	16	5	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0003	3282	3	3	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0004	3282	1	0	1	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0005	3282	1	0	0	0	0	1	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0006	3282	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0007	3282	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0008	3282	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0009	3282	1	0	0	0	0	1	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0010	3282	1	0	1	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	c0011	3282	1	0	0	1	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKG1_chr7_56075295_56097952	1/1	c0001	1164	285	81	50	121	7	24	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0002	1164	63	5	5	50	2	1	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0003	1164	61	8	23	12	5	13	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0004	1164	2	0	0	2	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0005	1164	1	1	0	0	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0006	1164	1	0	0	1	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0007	1164	1	1	0	0	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0008	1164	1	0	0	0	0	1	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0009	1164	1	0	0	1	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0010	1164	1	0	0	0	0	1	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	c0011	1164	1	0	0	1	0	0	copy fasta	PHKG1	chr7	56075295	56097952