JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF28_chr5_73621196_73946990	0/0	c0040	5118	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0041	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0042	5118	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0043	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0044	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0045	5118	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0046	5118	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0047	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0048	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0049	5118	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0050	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0051	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0052	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0053	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0054	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0055	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0056	5118	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0057	5118	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0058	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0059	5118	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0060	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0061	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0062	5118	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0063	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0064	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0065	5118	1	0	0	0	1	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0066	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0067	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0068	5118	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0069	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0070	5118	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0071	5118	1	0	0	0	0	1	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0072	5118	1	0	1	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0073	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0074	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0075	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0076	5118	1	1	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/1	c0077	5118	1	0	0	0	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF28_chr5_73621196_73946990	0/0	c0078	5118	1	0	0	1	0	0	copy fasta	ARHGEF28	chr5	73621196	73946990
ARHGEF2_chr1_155941854_155983547	1/1	c0001	2961	269	78	49	94	12	34	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	c0002	2961	5	5	0	0	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	c0003	2961	4	3	1	0	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	c0004	2961	3	0	0	3	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	c0005	2961	1	1	0	0	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	c0006	2961	1	0	0	1	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF2_chr1_155941854_155983547	0/0	c0007	2961	1	1	0	0	0	0	copy fasta	ARHGEF2	chr1	155941854	155983547
ARHGEF33_chr2_38884875_38980454	0/1	c0001	2613	222	76	47	66	4	28	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	1/0	c0002	2613	35	1	3	23	0	7	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	c0003	2613	5	0	0	5	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454
ARHGEF33_chr2_38884875_38980454	0/0	c0004	2613	3	3	0	0	0	0	copy fasta	ARHGEF33	chr2	38884875	38980454