JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHKG2_chr16_30743425_30766176	1/1	c0001	1221	258	81	62	68	11	34	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	c0002	1221	2	1	0	1	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	c0003	1221	1	0	0	1	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	c0004	1221	1	0	0	0	1	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	c0005	1221	1	0	0	1	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	c0006	1221	1	0	0	1	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHLDA1_chr12_76020447_76036776	0/1	c0001	1203	421	94	79	190	17	40	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0002	1203	22	1	0	17	1	3	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0003	1203	8	0	0	8	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	1/0	c0004	1206	2	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0005	1203	2	0	0	2	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0006	1203	1	0	1	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0007	1203	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0008	1203	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0009	1206	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0010	1203	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0011	1203	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	c0012	1203	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA2_chr11_2923273_2934420	0/1	c0001	459	354	90	66	142	17	38	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	c0002	459	17	3	7	0	1	6	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	c0003	459	4	3	1	0	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA3_chr1_201459278_201474188	1/1	c0001	384	432	94	76	202	16	42	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	c0002	384	5	1	4	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	c0003	384	2	0	0	2	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	c0004	384	1	0	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	c0005	344	1	1	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	c0006	384	1	0	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDB1_chr11_118602615_118663028	1/1	c0001	4134	138	35	20	55	6	20	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0002	4134	95	15	17	52	3	8	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0003	4134	65	5	15	36	2	7	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0004	4134	16	15	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0005	4134	13	7	5	0	1	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0006	4134	4	0	0	3	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0007	4134	2	2	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0008	4134	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0009	4134	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0010	4134	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0011	4134	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0012	4134	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0013	4134	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0014	4134	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0015	4134	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0016	4134	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0017	4134	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0018	4134	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0019	4134	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0020	4134	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0021	4134	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0022	4134	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0023	4134	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028