JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHLDB1_chr11_118602615_118663028	0/0	c0024	4134	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0025	4134	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0026	4134	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0027	4134	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0028	4134	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0029	4134	1	0	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	c0030	4134	1	0	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB2_chr3_111854265_111981517	1/1	c0001	3762	151	25	42	55	8	19	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0002	3762	38	3	9	23	0	3	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0003	3762	27	2	10	5	4	6	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0004	3762	23	22	1	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0005	3762	7	4	2	0	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0006	3762	5	5	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0007	3762	4	4	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0008	3762	4	4	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0009	3762	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0010	3762	2	0	0	2	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0011	3762	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0012	3762	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0013	3762	2	2	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0014	3762	1	0	0	1	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0015	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0016	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0017	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0018	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0019	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0020	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0021	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0022	3762	1	0	1	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0023	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0024	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0025	3762	1	0	0	1	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0026	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0027	3762	1	0	0	0	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0028	3762	1	0	1	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0029	3762	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	c0030	3762	1	0	0	1	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB3_chr19_43470103_43509746	0/0	c0001	1923	135	16	24	77	2	16	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	1/0	c0002	1923	65	7	11	34	3	9	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0003	1923	39	15	7	6	4	7	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0004	1923	36	20	6	0	4	6	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0005	1923	33	0	11	20	0	2	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0006	1923	27	0	0	24	0	3	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0007	1923	8	3	3	0	1	1	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0008	1923	8	7	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0009	1923	6	6	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0010	1923	4	4	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0011	1923	4	3	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0012	1923	3	0	1	0	0	2	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0013	1923	3	0	0	3	0	0	copy fasta	PHLDB3	chr19	43470103	43509746