JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHLDB3_chr19_43470103_43509746	0/0	c0014	1923	3	3	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0015	1923	3	0	0	3	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0016	1923	2	2	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/1	c0017	1923	2	0	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0018	1923	2	2	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0019	1923	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0020	1923	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0021	1923	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0022	1941	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0023	1923	1	0	0	0	0	1	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0024	1923	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0025	1923	1	0	0	0	0	1	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0026	1923	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0027	1923	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0028	1923	1	0	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0029	1923	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0030	1923	1	0	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	c0031	1923	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLPP1_chr18_62710541_62985433	0/1	c0001	5154	87	35	15	24	4	8	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	1/0	c0002	5154	69	27	5	29	1	6	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0003	5151	5	5	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0004	5154	4	0	3	0	0	1	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0005	5154	3	2	1	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0006	5151	2	2	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0007	5154	2	0	2	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0008	5154	2	0	2	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0009	5154	2	0	2	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0010	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0011	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0012	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0013	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0014	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0015	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0016	5154	1	0	1	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0017	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0018	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0019	5154	1	0	1	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0020	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0021	5154	1	0	0	0	0	1	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0022	5154	1	0	0	1	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0023	5154	1	0	0	0	1	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0024	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	c0025	5154	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP2_chr16_71639924_71729701	1/0	c0001	3972	158	66	24	51	6	10	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0002	3972	51	0	5	31	0	15	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0003	3972	26	3	10	6	3	4	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0004	3972	23	6	13	1	0	3	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0005	3972	18	0	2	11	1	4	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0006	3972	14	1	8	5	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0007	3972	9	9	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701