JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHLPP2_chr16_71639924_71729701	0/0	c0008	3972	4	0	0	4	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0009	3972	2	0	0	0	0	2	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0010	3972	2	0	2	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0011	3972	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0012	3972	1	0	1	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0013	3972	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0014	3972	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0015	3972	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0016	3972	1	0	1	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0017	3972	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0018	3972	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/1	c0019	3972	1	0	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0020	3972	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0021	3972	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0022	3972	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0023	3972	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0024	3972	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0025	3972	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0026	3972	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	c0027	3972	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHOSPHO1_chr17_49218366_49235787	1/1	c0001	804	419	96	81	180	14	46	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	c0002	804	1	0	1	0	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO2_chr2_169689469_169706708	1/1	c0001	726	426	95	64	212	14	39	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	c0002	726	3	0	0	0	0	3	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	c0003	726	2	0	0	0	0	2	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	c0004	726	2	0	0	2	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	c0005	726	1	0	0	1	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	c0006	726	1	0	0	1	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	c0007	726	1	1	0	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOX2A_chr11_72234077_72249176	1/1	c0001	855	353	91	60	144	14	42	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	c0002	846	7	7	0	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	c0003	855	5	0	3	2	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	c0004	855	1	0	1	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2B_chr4_41739082_41753725	1/1	c0001	945	317	75	67	124	9	40	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0002	945	40	6	1	32	0	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0003	945	9	6	1	0	1	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0004	924	3	0	0	2	0	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0005	930	3	0	0	3	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0006	945	2	2	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0007	945	2	0	0	2	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0008	945	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0009	945	1	0	0	0	0	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0010	945	1	0	0	1	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0011	945	1	0	1	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0012	945	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	c0013	945	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHPT1_chr9_136844409_136856024	1/1	c0001	378	328	79	77	121	16	33	copy fasta	PHPT1	chr9	136844409	136856024
PHPT1_chr9_136844409_136856024	0/0	c0002	378	13	0	3	1	0	9	copy fasta	PHPT1	chr9	136844409	136856024
PHPT1_chr9_136844409_136856024	0/0	c0003	378	3	3	0	0	0	0	copy fasta	PHPT1	chr9	136844409	136856024
PHRF1_chr11_571470_617222	0/0	c0001	4950	95	7	19	48	4	17	copy fasta	PHRF1	chr11	571470	617222