JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHRF1_chr11_571470_617222	0/0	c0002	4950	59	11	10	32	1	5	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/1	c0003	4950	29	11	10	3	2	2	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0004	4938	12	7	5	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0005	4950	10	0	9	0	1	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0006	4950	9	7	1	0	1	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0007	4950	8	0	2	1	1	4	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0008	4938	6	6	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0009	4950	5	4	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0010	4950	4	4	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0011	4950	4	4	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0012	4938	3	3	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0013	4950	3	3	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0014	4950	3	2	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0015	4950	2	0	2	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0016	4950	2	2	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0017	4950	2	2	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0018	4950	2	0	0	2	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0019	4950	2	0	0	2	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0020	4938	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0021	4938	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0022	4938	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0023	4950	1	0	0	0	1	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0024	4950	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0025	4950	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0026	4950	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0027	4950	1	0	0	0	1	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0028	4950	1	0	0	0	0	1	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0029	4950	1	0	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0030	4950	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0031	4950	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0032	4950	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0033	4950	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0034	4950	1	0	0	0	0	1	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0035	4950	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0036	4950	1	0	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0037	4950	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	c0038	4950	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHTF1_chr1_113691831_113764486	1/1	c0001	2289	299	53	55	136	14	39	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0002	2289	18	5	1	12	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0003	2289	5	4	1	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0004	2289	3	3	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0005	2030	1	1	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0006	2289	1	1	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0007	2289	1	0	1	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0008	2289	1	0	0	0	0	1	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	c0009	2289	1	1	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF2_chr7_77793773_77962225	1/1	c0001	2256	243	70	47	91	9	24	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	c0002	2256	57	13	11	20	1	12	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	c0003	2256	5	0	2	0	2	1	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	c0004	2256	3	3	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225