JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHTF2_chr7_77793773_77962225	0/0	c0005	2256	2	0	0	0	2	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	c0006	2256	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	c0007	2256	1	0	0	0	0	1	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	c0008	2256	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	c0009	2256	1	0	0	1	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHYHD1_chr9_128915982_128947038	1/0	c0001	876	258	56	41	115	13	32	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/1	c0002	876	128	28	34	46	5	14	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0003	876	5	5	0	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0004	876	3	0	0	3	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0005	876	3	3	0	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0006	876	2	2	0	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0007	876	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0008	876	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0009	876	1	0	1	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0010	876	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	c0011	876	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHIPL_chr10_59171643_59252770	0/0	c0001	1131	109	54	7	34	1	13	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	c0002	1131	91	29	14	36	1	11	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	c0003	1131	1	1	0	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	c0004	1131	1	0	1	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIP_chr8_22214703_22237099	0/1	c0001	993	303	69	54	143	9	27	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	c0002	993	124	22	30	44	7	21	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	c0003	993	2	2	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	1/0	c0004	993	2	0	0	1	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	c0005	993	1	1	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	c0006	993	1	0	0	1	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	c0007	993	1	1	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	c0008	993	1	0	0	1	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	c0009	993	1	1	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYH_chr10_13272799_13305064	0/1	c0001	1017	306	37	58	162	12	36	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0002	1017	81	35	9	31	2	4	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0003	1017	21	8	6	1	2	4	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0004	1017	11	2	2	3	2	2	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	1/0	c0005	1017	9	8	0	0	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0006	1017	3	2	1	0	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0007	1017	2	0	0	2	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0008	1017	1	0	1	0	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0009	1017	1	0	0	0	0	1	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0010	1017	1	0	0	0	0	1	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0011	1017	1	0	0	1	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	c0012	1017	1	0	1	0	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYKPL_chr5_178203471_178237802	1/1	c0001	1353	353	56	74	162	16	43	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0002	1353	39	16	5	14	0	4	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0003	1353	22	5	0	17	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0004	1353	14	13	1	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0005	1353	6	6	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0006	1363	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0007	1353	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0008	1353	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0009	1353	1	0	0	0	0	1	copy fasta	PHYKPL	chr5	178203471	178237802