JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHYKPL_chr5_178203471_178237802	0/0	c0010	1353	1	1	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	c0011	1353	1	1	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PI15_chr8_74819534_74860029	1/1	c0001	777	333	86	62	129	16	38	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	c0002	777	2	0	0	2	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	c0003	777	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	c0004	777	1	0	0	1	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	c0005	777	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI16_chr6_36949738_36969837	0/0	c0001	1392	171	30	39	74	10	18	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	1/0	c0002	1392	139	17	14	86	1	20	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0003	1392	34	18	4	12	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/1	c0004	1392	15	3	5	0	3	3	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0005	1392	13	11	2	0	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0006	1392	12	2	1	6	0	3	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0007	1392	12	0	0	12	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0008	1392	9	3	0	6	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0009	1392	8	8	0	0	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0010	1392	5	0	0	5	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0011	1392	3	2	1	0	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0012	1392	2	2	0	0	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0013	1392	2	2	0	0	0	0	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	c0014	1392	1	0	0	1	0	0	copy fasta	PI16	chr6	36949738	36969837
PI3_chr20_45169902_45181544	1/1	c0001	354	384	77	69	186	12	38	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	c0002	354	26	6	8	6	2	4	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	c0003	354	5	4	1	0	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	c0004	354	4	4	0	0	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	c0005	354	3	3	0	0	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	c0006	354	2	0	0	2	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	c0007	354	1	0	0	1	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	c0008	354	1	0	0	1	0	0	copy fasta	PI3	chr20	45169902	45181544
PI4K2A_chr10_97635671_97681434	1/1	c0001	1440	197	32	43	84	10	26	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	c0002	1440	89	42	11	33	0	3	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	c0003	1440	58	17	11	20	4	6	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	c0004	1440	3	3	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	c0005	1440	1	0	0	0	0	1	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	c0006	1440	1	0	1	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	c0007	1440	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2B_chr4_25229033_25284204	0/1	c0001	1446	171	14	38	93	4	21	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	1/0	c0002	1446	91	17	16	47	1	9	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0003	1446	67	45	10	6	2	4	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0004	1446	60	12	13	27	1	7	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0005	1446	34	7	1	24	0	2	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0006	1443	5	0	0	5	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0007	1446	1	0	0	1	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0008	1446	1	0	0	0	0	1	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0009	1446	1	0	1	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0010	1446	1	1	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0011	1446	1	0	0	1	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0012	1446	1	1	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0013	1446	1	1	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	c0014	1446	1	0	1	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204