JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PI4KA_chr22_20702691_20863811	0/0	c0001	6309	117	23	25	53	7	9	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	1/1	c0002	6309	105	17	23	45	3	15	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0003	6309	28	1	4	15	2	6	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0004	6309	14	14	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0005	6309	12	0	0	12	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0006	6309	9	2	0	5	0	2	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0007	6309	6	0	3	3	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0008	6321	5	4	1	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0009	6315	5	5	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0010	6309	3	0	3	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0011	6309	2	0	1	0	0	1	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0012	6309	2	0	0	2	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0013	6309	2	2	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0014	6321	1	0	1	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0015	6321	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0016	6315	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0017	6315	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0018	6315	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0019	6315	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0020	6315	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0021	6315	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0022	6309	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0023	6309	1	0	0	1	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0024	6309	1	0	1	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0025	6309	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0026	6309	1	0	0	1	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0027	6309	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0028	6309	1	0	1	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0029	6309	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0030	6309	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0031	6309	1	0	0	0	0	1	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0032	6309	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0033	6309	1	0	0	1	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0034	6309	1	0	1	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0035	6309	1	0	0	0	0	1	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0036	6309	1	1	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	c0037	6309	1	0	0	0	0	1	copy fasta	PI4KA	chr22	20702691	20863811
PI4KB_chr1_151286804_151332416	1/0	c0001	2451	168	48	26	63	8	22	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/1	c0002	2451	133	22	31	59	5	15	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0003	2451	6	0	0	6	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0004	2451	4	4	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0005	2451	3	0	0	3	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0006	2451	3	2	1	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0007	2451	2	0	0	0	0	2	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0008	2451	2	0	1	0	1	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0009	2451	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0010	2451	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0011	2451	1	0	1	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0012	2451	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0013	2451	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416