JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PI4KB_chr1_151286804_151332416	0/0	c0014	2451	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0015	2451	1	0	0	0	0	1	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0016	2451	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	c0017	2451	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PIANP_chr12_6688791_6705815	1/1	c0001	831	335	95	82	98	16	42	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	c0002	831	1	0	0	1	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	c0003	831	1	1	0	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	c0004	831	1	0	0	1	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIAS1_chr15_68049315_68198847	1/1	c0001	1956	241	84	59	64	12	20	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0002	1956	7	0	0	7	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0003	1956	3	0	0	3	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0004	1956	2	2	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0005	1956	2	2	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0006	1956	2	2	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0007	1956	1	0	1	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0008	1956	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	c0009	1956	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS2_chr18_46798218_46922507	1/1	c0001	1866	304	73	54	134	14	27	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	c0002	1866	9	2	0	7	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	c0003	1866	3	2	1	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	c0004	1866	2	0	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	c0005	1866	1	1	0	0	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	c0006	1866	1	0	0	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	c0007	1866	1	0	0	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	c0008	1866	1	0	0	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS3_chr1_145843522_145864081	1/1	c0001	1887	351	80	65	147	18	39	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0002	1887	7	7	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0003	1887	2	2	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0004	1887	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0005	1887	1	0	0	0	0	1	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0006	1887	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0007	1887	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0008	1887	1	0	1	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0009	1887	1	0	0	1	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0010	1887	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS3_chr1_145843522_145864081	0/0	c0011	1887	1	1	0	0	0	0	copy fasta	PIAS3	chr1	145843522	145864081
PIAS4_chr19_4002736_4044386	0/1	c0001	1533	173	11	49	75	11	26	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0002	1533	39	23	6	7	1	2	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0003	1533	28	6	8	5	5	4	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0004	1533	27	27	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0005	1533	23	8	4	2	0	9	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0006	1533	12	12	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0007	1533	9	0	6	0	1	2	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	1/0	c0008	1533	6	1	0	3	0	1	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0009	1533	5	0	0	5	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0010	1533	2	0	0	0	0	2	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0011	1533	2	2	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0012	1533	2	1	0	1	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0013	1533	2	0	2	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0014	1533	1	0	1	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386