JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIAS4_chr19_4002736_4044386	0/0	c0015	1533	1	0	0	1	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0016	1533	1	0	0	1	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIAS4_chr19_4002736_4044386	0/0	c0017	1533	1	1	0	0	0	0	copy fasta	PIAS4	chr19	4002736	4044386
PIBF1_chr13_72777133_73021461	1/1	c0001	2274	207	34	47	93	9	22	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0002	2274	110	46	10	46	3	5	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0003	2274	6	0	3	2	0	1	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0004	2274	6	0	2	0	0	4	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0005	2274	4	4	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0006	2274	3	3	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0007	2274	1	1	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0008	2274	1	0	0	1	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0009	2274	1	0	0	1	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0010	2274	1	0	1	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0011	2274	1	0	0	0	1	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0012	2274	1	1	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0013	2274	1	0	0	0	1	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0014	2274	1	0	0	1	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0015	2274	1	1	0	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PIBF1_chr13_72777133_73021461	0/0	c0016	2274	1	0	1	0	0	0	copy fasta	PIBF1	chr13	72777133	73021461
PICALM_chr11_85952175_86074084	0/1	c0001	1959	221	45	30	107	7	31	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	1/0	c0002	1959	78	8	17	42	1	9	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0003	1959	39	17	11	4	3	4	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0004	1959	10	10	0	0	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0005	1959	3	0	0	3	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0006	1959	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0007	1959	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0008	1959	1	0	0	0	1	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0009	1959	1	0	0	0	0	1	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0010	1959	1	0	0	0	0	1	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0011	1959	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICALM_chr11_85952175_86074084	0/0	c0012	1959	1	0	0	1	0	0	copy fasta	PICALM	chr11	85952175	86074084
PICK1_chr22_38052404_38080701	1/1	c0001	1248	416	99	78	176	15	46	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	c0002	1248	8	1	0	7	0	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	c0003	1248	2	0	0	2	0	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	c0004	1248	1	0	0	0	1	0	copy fasta	PICK1	chr22	38052404	38080701
PICK1_chr22_38052404_38080701	0/0	c0005	1219	1	0	0	1	0	0	copy fasta	PICK1	chr22	38052404	38080701
PID1_chr2_229018973_229276287	1/1	c0001	654	242	70	52	86	5	27	copy fasta	PID1	chr2	229018973	229276287
PID1_chr2_229018973_229276287	0/0	c0002	654	14	8	2	0	1	3	copy fasta	PID1	chr2	229018973	229276287
PIDD1_chr11_794184_810231	1/0	c0001	2733	195	42	29	88	4	31	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/1	c0002	2733	127	13	41	59	5	8	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0003	2733	10	0	0	8	0	2	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0004	2733	8	7	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0005	2733	8	8	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0006	2733	7	7	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0007	2733	7	6	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0008	2733	6	0	3	0	2	1	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0009	2733	5	3	1	0	1	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0010	2734	3	0	0	2	1	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0011	2733	3	0	0	3	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0012	2733	2	0	0	2	0	0	copy fasta	PIDD1	chr11	794184	810231