JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIDD1_chr11_794184_810231	0/0	c0013	2733	2	1	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0014	2733	2	0	0	2	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0015	2734	2	0	1	1	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0016	2733	2	2	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0017	2734	2	1	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0018	2733	2	1	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0019	2733	1	0	0	0	0	1	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0020	2733	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0021	2733	1	0	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0022	2733	1	0	0	0	1	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0023	2733	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0024	2733	1	0	1	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0025	2733	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0026	2734	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0027	2733	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0028	2733	1	0	0	1	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0029	2733	1	0	0	0	0	1	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0030	2733	1	0	0	1	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0031	2734	1	0	0	1	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0032	2733	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIDD1_chr11_794184_810231	0/0	c0033	2733	1	1	0	0	0	0	copy fasta	PIDD1	chr11	794184	810231
PIERCE1_chr9_135490181_135504869	1/1	c0001	411	414	99	77	170	18	48	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	c0002	411	3	0	0	3	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	c0003	411	1	0	0	1	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	c0004	411	1	0	0	1	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	c0005	411	1	0	0	1	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	c0006	466	1	0	1	0	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE1_chr9_135490181_135504869	0/0	c0007	411	1	1	0	0	0	0	copy fasta	PIERCE1	chr9	135490181	135504869
PIERCE2_chr15_55403495_55423798	1/1	c0001	366	363	48	70	186	17	40	copy fasta	PIERCE2	chr15	55403495	55423798
PIERCE2_chr15_55403495_55423798	0/0	c0002	366	52	37	6	2	1	6	copy fasta	PIERCE2	chr15	55403495	55423798
PIERCE2_chr15_55403495_55423798	0/0	c0003	366	1	1	0	0	0	0	copy fasta	PIERCE2	chr15	55403495	55423798
PIEZO1_chr16_88710338_88790220	0/0	c0001	7566	25	2	10	11	0	2	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/1	c0002	7566	23	0	3	19	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0003	7566	6	0	0	5	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0004	7563	6	1	3	0	0	2	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0005	7572	6	3	1	0	1	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0006	7566	6	1	1	1	0	3	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0007	7566	5	0	0	3	2	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0008	7566	5	5	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0009	7566	4	0	1	2	1	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0010	7566	4	3	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0011	7563	4	0	2	0	1	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0012	7563	4	0	3	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0013	7563	4	4	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0014	7563	4	4	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0015	7563	3	0	2	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0016	7566	3	0	3	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0017	7572	3	2	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0018	7566	3	0	0	3	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0019	7572	3	3	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220