JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIEZO1_chr16_88710338_88790220	0/0	c0070	7566	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0071	7566	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0072	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0073	7566	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0074	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0075	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0076	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0077	7563	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0078	7572	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0079	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0080	7563	1	0	0	0	1	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0081	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0082	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0083	7572	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0084	7572	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0085	7572	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0086	7572	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0087	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0088	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0089	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0090	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0091	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0092	7563	1	0	0	0	1	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0093	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0094	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0095	7627	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0096	7583	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0097	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0098	7572	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0099	7563	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0100	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0101	7566	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0102	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0103	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0104	7566	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0105	7566	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0106	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0107	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0108	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0109	7551	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0110	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0111	7563	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0112	7563	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0113	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0114	7563	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0115	7563	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0116	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0117	7572	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0118	7563	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0119	7563	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220