JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIEZO1_chr16_88710338_88790220	0/0	c0120	7563	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0121	7566	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0122	7563	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0123	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0124	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0125	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0126	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0127	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0128	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0129	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0130	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0131	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0132	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0133	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0134	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0135	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0136	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0137	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0138	7561	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0139	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0140	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0141	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0142	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0143	7563	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0144	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0145	7572	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0146	7563	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0147	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	1/0	c0148	7566	1	0	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0149	7566	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0150	7566	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0151	7566	1	0	0	0	1	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0152	7566	1	0	0	0	0	1	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0153	7566	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0154	7566	1	0	1	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0155	7566	1	0	0	1	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0156	7566	1	0	0	0	1	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO1_chr16_88710338_88790220	0/0	c0157	7572	1	1	0	0	0	0	copy fasta	PIEZO1	chr16	88710338	88790220
PIEZO2_chr18_10665247_11154569	0/0	c0001	8598	18	7	1	7	2	1	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0002	8598	5	4	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0003	8598	4	4	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0004	8598	4	4	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0005	8598	4	0	1	3	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0006	8598	4	3	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0007	8598	4	0	2	2	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0008	8598	3	3	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0009	8598	3	0	1	1	0	1	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0010	8598	3	3	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0011	8598	3	0	3	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0012	8598	3	0	2	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569