JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIEZO2_chr18_10665247_11154569	0/0	c0063	8598	1	0	0	0	1	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0064	8598	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0065	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0066	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0067	8598	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0068	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0069	8598	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0070	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0071	8598	1	0	0	0	1	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0072	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0073	8598	1	0	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0074	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0075	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0076	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0077	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0078	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0079	8598	1	0	0	0	1	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0080	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0081	8598	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0082	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0083	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0084	8598	1	1	0	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0085	8598	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0086	8598	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0087	8598	1	0	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0088	8598	1	0	0	0	0	1	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0089	8598	1	0	0	1	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0090	8598	1	0	0	0	0	1	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0091	8598	1	0	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIEZO2_chr18_10665247_11154569	0/0	c0092	8598	1	0	1	0	0	0	copy fasta	PIEZO2	chr18	10665247	11154569
PIF1_chr15_64810632_64830647	0/0	c0001	1926	203	30	42	100	8	23	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0002	1926	61	8	23	14	6	10	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0003	1926	20	15	0	0	0	5	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0004	1926	12	11	0	0	0	1	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	1/0	c0005	1926	7	6	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0006	1926	5	5	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0007	1926	5	5	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0008	1926	4	0	0	1	0	3	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0009	1926	4	4	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0010	1926	3	0	0	3	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0011	1926	3	0	0	0	3	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0012	1926	2	2	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0013	1926	2	2	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0014	1926	2	0	0	0	0	2	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0015	1926	2	0	0	2	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0016	1926	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0017	1926	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0018	1926	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0019	1926	1	0	0	0	0	1	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0020	1926	1	0	0	0	1	0	copy fasta	PIF1	chr15	64810632	64830647