JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIF1_chr15_64810632_64830647	0/0	c0021	1926	1	0	0	1	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0022	1926	1	0	1	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0023	1926	1	0	0	1	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0024	1926	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0025	1926	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0026	1926	1	0	0	0	0	1	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/0	c0027	1926	1	1	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIF1_chr15_64810632_64830647	0/1	c0028	1926	1	0	0	0	0	0	copy fasta	PIF1	chr15	64810632	64830647
PIFO_chr1_111341622_111358013	1/0	c0001	576	411	86	56	209	13	46	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/1	c0002	576	25	10	9	0	1	4	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	c0003	576	2	1	1	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	c0004	576	1	0	0	1	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIFO_chr1_111341622_111358013	0/0	c0005	576	1	1	0	0	0	0	copy fasta	PIFO	chr1	111341622	111358013
PIGA_chrX_15314456_15340523	1/1	c0001	1455	297	76	54	126	9	30	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	c0002	1455	6	1	3	0	2	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	c0003	1455	4	0	0	4	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGA_chrX_15314456_15340523	0/0	c0004	1455	1	1	0	0	0	0	copy fasta	PIGA	chrX	15314456	15340523
PIGBOS1_chr15_55312184_55324123	1/1	c0001	165	411	87	76	182	18	46	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGBOS1_chr15_55312184_55324123	0/0	c0002	165	5	5	0	0	0	0	copy fasta	PIGBOS1	chr15	55312184	55324123
PIGB_chr15_55314222_55360648	0/0	c0001	1665	148	60	16	55	4	13	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	1/1	c0002	1665	100	5	22	50	8	13	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0003	1665	84	0	14	58	5	7	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0004	1665	11	11	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0005	1665	8	0	4	0	1	3	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0006	1665	5	5	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0007	1665	4	0	0	3	0	1	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0008	1665	4	4	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0009	1665	3	3	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0010	1665	2	2	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0011	1665	2	2	0	0	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0012	1665	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0013	1665	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0014	1665	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0015	1665	1	0	0	1	0	0	copy fasta	PIGB	chr15	55314222	55360648
PIGB_chr15_55314222_55360648	0/0	c0016	1665	1	0	0	0	0	1	copy fasta	PIGB	chr15	55314222	55360648
PIGC_chr1_172436457_172449069	0/0	c0001	894	205	78	33	74	4	16	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/1	c0002	894	160	5	37	86	11	20	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	1/0	c0003	894	18	6	7	0	3	1	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	c0004	894	1	1	0	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	c0005	894	1	0	1	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	c0006	894	1	1	0	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	c0007	894	1	0	0	0	0	1	copy fasta	PIGC	chr1	172436457	172449069
PIGC_chr1_172436457_172449069	0/0	c0008	894	1	1	0	0	0	0	copy fasta	PIGC	chr1	172436457	172449069
PIGF_chr2_46575937_46622041	1/1	c0001	660	300	90	49	109	14	36	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	c0002	660	60	2	25	21	2	10	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	c0003	660	2	1	1	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	c0004	660	1	0	1	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	c0005	660	1	1	0	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	c0006	660	1	1	0	0	0	0	copy fasta	PIGF	chr2	46575937	46622041
PIGF_chr2_46575937_46622041	0/0	c0007	660	1	1	0	0	0	0	copy fasta	PIGF	chr2	46575937	46622041