JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIGG_chr4_494210_545200	1/1	c0001	2952	211	44	59	66	8	32	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0002	2952	61	4	3	48	2	4	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0003	2952	13	12	1	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0004	2952	12	1	0	7	0	4	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0005	2952	7	1	0	5	0	1	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0006	2952	6	5	1	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0007	2952	5	0	3	0	0	2	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0008	2952	5	5	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0009	2952	5	5	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0010	2952	4	3	1	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0011	2952	4	4	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0012	2952	4	1	1	2	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0013	2952	3	1	1	0	0	1	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0014	2952	3	0	0	3	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0015	2952	2	2	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0016	2952	2	1	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0017	2952	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0018	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0019	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0020	2952	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0021	2952	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0022	2952	1	0	0	0	0	1	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0023	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0024	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0025	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0026	2952	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0027	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0028	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0029	2952	1	0	0	1	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0030	2952	1	1	0	0	0	0	copy fasta	PIGG	chr4	494210	545200
PIGG_chr4_494210_545200	0/0	c0031	2952	1	0	0	0	0	1	copy fasta	PIGG	chr4	494210	545200
PIGH_chr14_67584318_67605268	1/1	c0001	567	411	68	69	210	17	45	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	c0002	567	25	8	8	6	1	2	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	c0003	567	14	14	0	0	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	c0004	567	11	9	1	0	0	1	copy fasta	PIGH	chr14	67584318	67605268
PIGH_chr14_67584318_67605268	0/0	c0005	567	1	1	0	0	0	0	copy fasta	PIGH	chr14	67584318	67605268
PIGK_chr1_77083989_77224430	0/1	c0001	1188	293	42	56	149	14	31	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	c0002	1188	62	38	15	4	0	5	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	c0003	1188	4	4	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	1/0	c0004	1188	3	1	1	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	c0005	1188	2	2	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	c0006	1188	1	1	0	0	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGK_chr1_77083989_77224430	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	PIGK	chr1	77083989	77224430
PIGL_chr17_16212210_16331411	1/1	c0001	759	245	84	61	60	10	28	copy fasta	PIGL	chr17	16212210	16331411
PIGL_chr17_16212210_16331411	0/0	c0002	759	1	0	1	0	0	0	copy fasta	PIGL	chr17	16212210	16331411
PIGM_chr1_160019953_160036990	1/1	c0001	1272	387	76	64	197	9	39	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	c0002	1272	20	0	5	8	3	4	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	c0003	1272	14	14	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	c0004	1272	3	0	0	0	0	3	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	c0005	1272	3	2	1	0	0	0	copy fasta	PIGM	chr1	160019953	160036990