JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIGM_chr1_160019953_160036990	0/0	c0006	1272	2	2	0	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	c0007	1272	1	0	1	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	c0008	1272	1	0	0	1	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGM_chr1_160019953_160036990	0/0	c0009	1272	1	0	1	0	0	0	copy fasta	PIGM	chr1	160019953	160036990
PIGN_chr18_62036164_62192056	0/0	c0001	2796	107	15	20	55	2	15	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	1/0	c0002	2796	55	8	15	23	3	5	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0003	2796	48	38	4	3	1	2	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0004	2796	47	3	4	27	2	11	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/1	c0005	2796	22	0	13	2	1	5	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0006	2796	16	3	0	12	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0007	2796	13	7	0	2	2	2	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0008	2796	12	0	0	12	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0009	2796	7	6	1	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0010	2796	2	2	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0011	2796	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0012	2796	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0013	2796	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0014	2796	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0015	2796	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0016	2796	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0017	2796	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0018	2796	1	1	0	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0019	2796	1	0	0	0	1	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0020	2796	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0021	2796	1	0	0	0	0	1	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0022	2796	1	0	0	1	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGN_chr18_62036164_62192056	0/0	c0023	2796	1	0	1	0	0	0	copy fasta	PIGN	chr18	62036164	62192056
PIGO_chr9_35083688_35101591	1/0	c0001	3270	274	67	40	131	9	26	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0002	3270	62	16	14	16	2	14	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0003	3270	59	1	5	48	1	4	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0004	3270	6	2	2	0	1	1	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0005	3270	3	3	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0006	3270	3	3	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0007	3270	2	2	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0008	3270	2	0	0	2	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0009	3270	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0010	3270	1	0	1	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0011	3270	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0012	3270	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0013	3270	1	0	1	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0014	3270	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0015	3270	1	0	0	0	1	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0016	3270	1	1	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/1	c0017	3270	1	0	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0018	3270	1	0	0	0	0	1	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0019	3270	1	0	0	0	0	1	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0020	3270	1	0	0	0	0	1	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0021	3270	1	0	1	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0022	3270	1	1	0	0	0	0	copy fasta	PIGO	chr9	35083688	35101591
PIGO_chr9_35083688_35101591	0/0	c0023	3270	1	0	0	1	0	0	copy fasta	PIGO	chr9	35083688	35101591