JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIGP_chr21_37060374_37078071	1/1	c0001	405	402	89	74	178	16	43	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	c0002	405	23	1	10	11	0	1	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	c0003	405	6	4	2	0	0	0	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	c0004	405	3	0	0	3	0	0	copy fasta	PIGP	chr21	37060374	37078071
PIGP_chr21_37060374_37078071	0/0	c0005	405	2	0	0	2	0	0	copy fasta	PIGP	chr21	37060374	37078071
PIGQ_chr16_564968_589109	1/1	c0001	1746	157	39	38	60	9	9	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0002	1746	155	20	22	87	3	23	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0003	1746	47	11	6	12	3	15	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0004	1746	13	10	3	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0005	1746	4	0	0	4	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0006	1746	3	0	2	0	1	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0007	1746	3	3	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0008	1746	3	3	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0009	1746	2	2	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0010	1746	2	2	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0011	1746	2	0	2	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0012	1746	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0013	1746	1	0	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0014	1746	1	0	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0015	1746	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0016	1746	1	0	1	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0017	1746	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0018	1746	1	0	0	0	0	1	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0019	1746	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0020	1746	1	0	0	0	0	1	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0021	1733	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0022	1746	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0023	1746	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0024	1746	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0025	1746	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0026	1746	1	0	0	0	0	1	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0027	1746	1	1	0	0	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGQ_chr16_564968_589109	0/0	c0028	1746	1	0	0	1	0	0	copy fasta	PIGQ	chr16	564968	589109
PIGR_chr1_206923522_206951466	1/1	c0001	2295	151	6	27	90	4	22	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0002	2295	106	12	17	58	7	12	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0003	2295	73	43	10	19	0	1	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0004	2295	34	27	7	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0005	2295	20	1	1	18	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0006	2295	2	0	1	0	1	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0007	2295	2	0	2	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0008	2295	2	0	2	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0009	2295	2	0	2	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0010	2295	2	1	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0011	2295	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0012	2295	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0013	2295	1	0	0	1	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0014	2295	1	0	0	0	0	1	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0015	2295	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0016	2295	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGR_chr1_206923522_206951466	0/0	c0017	2295	1	0	1	0	0	0	copy fasta	PIGR	chr1	206923522	206951466