JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIGR_chr1_206923522_206951466	0/0	c0018	2295	1	1	0	0	0	0	copy fasta	PIGR	chr1	206923522	206951466
PIGS_chr17_28548387_28576524	1/1	c0001	1668	304	65	61	137	8	31	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0002	1668	12	10	2	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0003	1668	5	5	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0004	1668	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0005	1668	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0006	1622	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0007	1668	1	0	1	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0008	1668	1	0	0	0	0	1	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0009	1668	1	1	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0010	1668	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0011	1668	1	0	0	1	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGS_chr17_28548387_28576524	0/0	c0012	1668	1	1	0	0	0	0	copy fasta	PIGS	chr17	28548387	28576524
PIGT_chr20_45411141_45431241	0/0	c0001	1737	197	65	30	75	2	25	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	1/0	c0002	1737	115	10	15	79	3	7	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/1	c0003	1737	108	10	23	50	11	13	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0004	1737	14	0	6	8	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0005	1737	5	4	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0006	1737	5	0	0	5	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0007	1737	3	3	0	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0008	1737	2	2	0	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0009	1737	2	0	2	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0010	1737	2	0	2	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0011	1737	1	0	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0012	1737	1	0	0	1	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0013	1737	1	0	0	1	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0014	1737	1	0	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0015	1781	1	0	0	1	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0016	1737	1	0	0	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0017	1737	1	0	0	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0018	1737	1	0	0	0	0	1	copy fasta	PIGT	chr20	45411141	45431241
PIGT_chr20_45411141_45431241	0/0	c0019	1737	1	0	1	0	0	0	copy fasta	PIGT	chr20	45411141	45431241
PIGU_chr20_34555542_34682092	1/1	c0001	1308	315	75	44	152	10	32	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	c0002	1308	2	0	2	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	c0003	1308	1	1	0	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	c0004	1308	1	1	0	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGU_chr20_34555542_34682092	0/0	c0005	1308	1	1	0	0	0	0	copy fasta	PIGU	chr20	34555542	34682092
PIGV_chr1_26782950_26805659	1/1	c0001	1482	277	75	51	93	18	38	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	c0002	1482	2	2	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	c0003	1482	1	0	1	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	c0004	1482	1	0	0	1	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGV_chr1_26782950_26805659	0/0	c0005	1482	1	1	0	0	0	0	copy fasta	PIGV	chr1	26782950	26805659
PIGW_chr17_36529987_36544303	0/1	c0001	1515	364	83	68	160	12	40	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	c0002	1515	33	0	8	21	2	2	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	c0003	1515	3	3	0	0	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	c0004	1515	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	c0005	1515	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGW_chr17_36529987_36544303	0/0	c0006	1550	1	0	0	1	0	0	copy fasta	PIGW	chr17	36529987	36544303
PIGX_chr3_196707377_196741007	1/1	c0001	777	330	71	49	160	12	36	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0002	777	44	18	16	0	3	7	copy fasta	PIGX	chr3	196707377	196741007