JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIGX_chr3_196707377_196741007	0/0	c0003	777	13	0	5	7	1	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0004	777	13	0	2	11	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0005	777	6	6	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0006	777	2	0	0	2	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0007	777	2	0	0	2	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0008	777	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0009	777	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0010	782	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0011	777	1	1	0	0	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0012	777	1	0	0	0	0	1	copy fasta	PIGX	chr3	196707377	196741007
PIGX_chr3_196707377_196741007	0/0	c0013	777	1	0	0	1	0	0	copy fasta	PIGX	chr3	196707377	196741007
PIGY_chr4_88515998_88528776	1/1	c0001	216	446	94	80	210	14	46	copy fasta	PIGY	chr4	88515998	88528776
PIGZ_chr3_196941356_196973833	0/0	c0001	1740	141	17	16	92	3	13	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0002	1740	38	9	8	14	1	6	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	1/0	c0003	1740	27	2	8	9	0	7	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0004	1740	27	9	5	9	3	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0005	1740	23	5	6	11	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0006	1740	20	0	14	3	2	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0007	1740	13	0	3	6	2	2	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0008	1740	12	10	0	0	0	2	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0009	1740	12	9	1	0	2	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0010	1740	6	0	0	6	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0011	1740	6	0	1	2	0	3	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0012	1740	6	0	3	3	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0013	1740	6	1	4	0	1	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0014	1740	5	1	0	3	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0015	1740	4	0	0	4	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0016	1740	4	4	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0017	1740	4	4	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0018	1740	4	0	0	4	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0019	1740	3	0	0	3	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0020	1740	3	0	0	0	0	3	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0021	1740	3	1	1	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/1	c0022	1740	3	0	0	0	0	2	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0023	1740	3	2	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0024	1740	3	0	0	0	1	2	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0025	1740	3	1	2	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0026	1740	3	0	0	3	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0027	1740	2	2	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0028	1740	2	1	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0029	1740	2	0	0	0	1	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0030	1740	2	1	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0031	1740	2	1	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0032	1740	2	2	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0033	1740	2	0	0	2	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0034	1740	2	2	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0035	1740	2	0	0	2	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0036	1740	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0037	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0038	1740	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833