JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIGZ_chr3_196941356_196973833	0/0	c0039	1740	1	0	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0040	1740	1	0	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0041	1740	1	0	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0042	1740	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0043	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0044	1740	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0045	1740	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0046	1740	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0047	1740	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0048	1740	1	0	1	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0049	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0050	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0051	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0052	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0053	1740	1	0	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0054	1740	1	0	0	1	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0055	1740	1	0	0	0	0	1	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0056	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0057	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0058	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIGZ_chr3_196941356_196973833	0/0	c0059	1740	1	1	0	0	0	0	copy fasta	PIGZ	chr3	196941356	196973833
PIH1D1_chr19_49441298_49456814	0/1	c0001	873	149	32	27	58	6	25	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	1/0	c0002	873	130	6	26	77	1	19	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0003	873	48	24	18	1	4	1	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0004	873	20	18	2	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0005	873	7	6	1	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0006	873	4	4	0	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0007	873	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0008	873	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0009	873	1	0	0	0	1	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0010	873	1	1	0	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0011	873	1	0	0	0	0	1	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0012	873	1	1	0	0	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0013	873	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D1_chr19_49441298_49456814	0/0	c0014	873	1	0	0	1	0	0	copy fasta	PIH1D1	chr19	49441298	49456814
PIH1D2_chr11_112062798_112079017	1/1	c0001	948	366	94	65	168	3	34	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	c0002	948	9	1	5	0	1	2	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	c0003	948	3	0	0	0	0	3	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	c0004	948	2	0	2	0	0	0	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	c0005	948	2	2	0	0	0	0	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	c0006	948	1	1	0	0	0	0	copy fasta	PIH1D2	chr11	112062798	112079017
PIH1D2_chr11_112062798_112079017	0/0	c0007	948	1	0	0	0	0	1	copy fasta	PIH1D2	chr11	112062798	112079017
PIK3AP1_chr10_96588315_96725514	0/1	c0001	2418	53	5	11	29	0	7	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0002	2418	45	9	10	21	0	5	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0003	2418	20	0	5	10	1	4	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0004	2418	19	4	11	3	1	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0005	2418	17	9	1	7	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0006	2418	16	13	0	3	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0007	2418	13	5	4	4	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0008	2418	10	6	3	0	0	1	copy fasta	PIK3AP1	chr10	96588315	96725514