JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIK3AP1_chr10_96588315_96725514	0/0	c0009	2418	9	5	1	0	0	3	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0010	2418	8	8	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	1/0	c0011	2418	6	4	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0012	2418	5	0	1	3	0	1	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0013	2418	4	0	2	2	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0014	2418	4	4	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0015	2418	2	0	2	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0016	2418	2	0	2	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0017	2418	2	2	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0018	2418	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0019	2418	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0020	2418	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0021	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0022	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0023	2418	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0024	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0025	2418	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0026	2418	1	0	0	1	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0027	2418	1	0	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0028	2418	1	0	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0029	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0030	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0031	2418	1	0	0	0	0	1	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0032	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0033	2418	1	0	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0034	2418	1	0	1	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0035	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0036	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0037	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3AP1_chr10_96588315_96725514	0/0	c0038	2418	1	1	0	0	0	0	copy fasta	PIK3AP1	chr10	96588315	96725514
PIK3C2A_chr11_17081575_17212986	0/1	c0001	5061	127	22	35	58	1	10	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0002	5061	108	34	28	34	0	12	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	1/0	c0003	5061	65	11	4	46	0	3	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0004	5061	20	7	8	1	1	3	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0005	5061	3	0	0	3	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0006	5061	2	0	2	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0007	5061	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0008	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0009	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0010	5061	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0011	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0012	5061	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0013	5061	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0014	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0015	5061	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0016	5061	1	0	0	0	0	1	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0017	5061	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0018	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0019	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0020	5061	1	0	0	1	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986