JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIK3C2A_chr11_17081575_17212986	0/0	c0021	5061	1	0	1	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0022	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2A_chr11_17081575_17212986	0/0	c0023	5061	1	1	0	0	0	0	copy fasta	PIK3C2A	chr11	17081575	17212986
PIK3C2B_chr1_204417633_204499805	0/1	c0001	4905	90	15	19	37	1	17	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0002	4905	62	1	4	45	4	8	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	1/0	c0003	4905	20	16	0	2	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0004	4905	18	1	0	15	0	2	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0005	4905	17	3	3	11	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0006	4905	14	10	4	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0007	4905	13	4	2	5	1	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0008	4905	13	12	0	0	1	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0009	4905	5	0	0	5	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0010	4905	5	5	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0011	4905	3	0	3	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0012	4905	3	0	0	3	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0013	4905	3	1	0	2	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0014	4905	2	0	0	1	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0015	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0016	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0017	4905	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0018	4905	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0019	4905	1	0	1	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0020	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0021	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0022	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0023	4905	1	0	0	0	1	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0024	4905	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0025	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0026	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0027	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0028	4905	1	0	1	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0029	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0030	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0031	4905	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0032	4905	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0033	4905	1	0	1	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0034	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0035	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0036	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0037	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0038	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0039	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0040	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0041	4905	1	0	0	1	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0042	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0043	4905	1	0	0	0	0	1	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0044	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0045	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0046	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2B_chr1_204417633_204499805	0/0	c0047	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805