JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIK3C2B_chr1_204417633_204499805	0/0	c0048	4905	1	1	0	0	0	0	copy fasta	PIK3C2B	chr1	204417633	204499805
PIK3C2G_chr12_18256518_18653416	1/0	c0001	4461	31	4	7	13	1	5	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/1	c0002	4458	23	4	5	8	1	4	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0003	4461	18	2	1	7	2	6	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0004	4461	12	1	2	9	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0005	4458	7	0	2	3	0	2	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0006	4461	6	6	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0007	4461	5	0	3	0	2	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0008	4461	5	2	1	1	1	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0009	4461	5	5	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0010	4461	4	1	2	0	1	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0011	4461	4	4	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0012	4458	3	3	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0013	4461	3	1	1	0	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0014	4461	3	3	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0015	4461	3	3	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0016	4458	2	0	1	1	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0017	4458	2	0	0	0	1	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0018	4458	2	2	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0019	4458	2	0	2	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0020	4461	2	2	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0021	4461	2	2	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0022	4461	2	2	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0023	4458	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0024	4458	1	0	0	0	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0025	4458	1	0	0	0	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0026	4458	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0027	4458	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0028	4458	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0029	4458	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0030	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0031	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0032	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0033	4461	1	0	0	0	1	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0034	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0035	4461	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0036	4461	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0037	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0038	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0039	4461	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0040	4461	1	0	0	0	0	1	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0041	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0042	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0043	4461	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0044	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0045	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0046	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0047	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0048	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0049	4461	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416