JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIK3C2G_chr12_18256518_18653416	0/0	c0050	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0051	4461	1	1	0	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C2G_chr12_18256518_18653416	0/0	c0052	4461	1	0	1	0	0	0	copy fasta	PIK3C2G	chr12	18256518	18653416
PIK3C3_chr18_41950234_42092830	1/1	c0001	2664	323	79	53	151	6	32	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	c0002	2664	8	0	4	1	2	1	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	c0003	2664	5	0	5	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	c0004	2664	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	c0005	2664	1	0	0	0	0	1	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	c0006	2664	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3C3_chr18_41950234_42092830	0/0	c0007	2664	1	1	0	0	0	0	copy fasta	PIK3C3	chr18	41950234	42092830
PIK3CA_chr3_179143357_179245093	1/1	c0001	3207	234	60	51	80	11	30	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	c0002	3207	32	21	9	0	1	1	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	c0003	3207	9	2	0	4	0	3	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	c0004	3207	2	2	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	c0005	3207	2	0	2	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	c0006	3207	1	0	0	1	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	c0007	3207	1	0	0	1	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CA_chr3_179143357_179245093	0/0	c0008	3207	1	1	0	0	0	0	copy fasta	PIK3CA	chr3	179143357	179245093
PIK3CB_chr3_138647698_138839928	1/1	c0001	3213	184	71	40	28	10	33	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	c0002	3213	16	14	2	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	c0003	3213	2	0	0	2	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	c0004	3213	2	2	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	c0005	3213	1	0	0	0	0	1	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CB_chr3_138647698_138839928	0/0	c0006	3213	1	1	0	0	0	0	copy fasta	PIK3CB	chr3	138647698	138839928
PIK3CD_chr1_9646731_9734114	1/0	c0001	3135	185	23	46	77	11	27	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0002	3135	78	35	5	24	2	12	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0003	3135	12	11	1	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0004	3135	9	0	8	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0005	3135	8	0	1	7	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0006	3135	3	0	3	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/1	c0007	3135	3	0	2	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0008	3135	3	0	0	0	0	3	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0009	3135	3	2	1	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0010	3135	2	2	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0011	3135	2	0	0	2	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0012	3135	2	2	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0013	3135	1	0	0	0	1	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0014	3135	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0015	3135	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0016	3135	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0017	3135	1	0	1	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0018	3135	1	0	0	1	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0019	3135	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CD_chr1_9646731_9734114	0/0	c0020	3135	1	1	0	0	0	0	copy fasta	PIK3CD	chr1	9646731	9734114
PIK3CG_chr7_106860282_106913980	0/1	c0001	3309	160	49	27	69	4	10	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0002	3309	93	7	20	50	4	12	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0003	3309	53	2	4	36	2	9	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0004	3309	27	6	9	5	1	6	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	1/0	c0005	3309	18	13	1	0	0	3	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0006	3309	9	9	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980