JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIK3CG_chr7_106860282_106913980	0/0	c0007	3309	6	6	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0008	3309	4	0	3	0	1	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0009	3309	2	2	0	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0010	3309	1	0	0	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0011	3309	1	0	0	1	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0012	3309	1	0	0	0	0	1	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0013	3309	1	0	0	0	0	1	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0014	3309	1	0	1	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3CG_chr7_106860282_106913980	0/0	c0015	3309	1	0	1	0	0	0	copy fasta	PIK3CG	chr7	106860282	106913980
PIK3IP1_chr22_31276600_31297488	0/1	c0001	792	347	82	47	170	10	37	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	1/0	c0002	792	70	1	29	27	8	4	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	0/0	c0003	792	2	0	0	1	0	1	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	0/0	c0004	792	1	1	0	0	0	0	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	0/0	c0005	792	1	1	0	0	0	0	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3IP1_chr22_31276600_31297488	0/0	c0006	792	1	1	0	0	0	0	copy fasta	PIK3IP1	chr22	31276600	31297488
PIK3R1_chr5_68210756_68306821	1/1	c0001	2175	108	20	37	26	5	18	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0002	2175	73	9	8	45	4	7	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0003	2175	40	27	3	1	6	3	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0004	2175	38	19	1	18	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0005	2175	17	1	3	10	0	3	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0006	2175	6	0	2	2	0	2	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0007	2175	5	0	1	0	1	3	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0008	2175	5	5	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0009	2175	3	3	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0010	2175	3	2	1	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0011	2175	2	0	0	2	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0012	2175	2	2	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0013	2175	2	2	0	0	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0014	2161	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0015	2175	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0016	2175	1	0	0	1	0	0	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R1_chr5_68210756_68306821	0/0	c0017	2175	1	0	0	0	0	1	copy fasta	PIK3R1	chr5	68210756	68306821
PIK3R2_chr19_18148163_18175532	0/1	c0001	2187	242	62	41	103	6	29	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0002	2187	32	24	6	0	1	1	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0003	2187	13	0	4	7	0	2	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0004	2187	10	3	2	0	2	3	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	1/0	c0005	2187	6	2	1	1	0	1	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0006	2187	6	0	4	0	1	1	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0007	2187	4	4	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0008	2187	3	0	2	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0009	2187	2	0	2	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0010	2187	2	0	0	0	0	2	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0011	2187	2	0	0	2	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0012	2187	2	0	0	2	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0013	2187	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0014	2187	1	0	0	0	1	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0015	2187	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0016	2187	1	1	0	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0017	2187	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0018	2187	1	0	1	0	0	0	copy fasta	PIK3R2	chr19	18148163	18175532