JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIK3R2_chr19_18148163_18175532	0/0	c0019	2187	1	0	0	0	0	1	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0020	2187	1	0	0	0	1	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0021	2187	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R2_chr19_18148163_18175532	0/0	c0022	2187	1	0	0	1	0	0	copy fasta	PIK3R2	chr19	18148163	18175532
PIK3R3_chr1_46035140_46137629	0/1	c0001	1386	186	46	40	71	8	20	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	1/0	c0002	1386	111	27	23	46	2	12	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	c0003	1386	16	15	1	0	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	c0004	1386	2	0	0	1	0	1	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	c0005	1386	1	0	0	0	0	1	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	c0006	1411	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R3_chr1_46035140_46137629	0/0	c0007	1386	1	0	0	1	0	0	copy fasta	PIK3R3	chr1	46035140	46137629
PIK3R4_chr3_130673934_130751829	1/1	c0001	4077	185	68	23	75	4	13	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0002	4077	78	8	18	40	2	10	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0003	4077	17	0	4	12	0	1	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0004	4077	10	0	0	8	0	2	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0005	4077	5	0	5	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0006	4077	2	0	0	2	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0007	4077	2	0	0	2	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0008	4077	2	2	0	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0009	4077	1	0	0	1	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0010	4077	1	1	0	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R4_chr3_130673934_130751829	0/0	c0011	4077	1	1	0	0	0	0	copy fasta	PIK3R4	chr3	130673934	130751829
PIK3R5_chr17_8873916_8970707	1/1	c0001	2643	163	21	32	78	7	23	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0002	2643	54	18	3	24	2	7	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0003	2643	39	24	9	0	2	4	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0004	2643	8	8	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0005	2643	4	4	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0006	2643	4	0	1	0	1	2	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0007	2643	3	3	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0008	2643	3	3	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0009	2643	2	0	0	2	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0010	2643	2	0	2	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0011	2643	2	2	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0012	2643	2	2	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0013	2643	2	0	0	0	0	2	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0014	2643	1	0	0	0	0	1	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0015	2643	1	0	0	1	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0016	2643	1	0	1	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0017	2643	1	0	0	1	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0018	2643	1	0	0	0	0	1	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0019	2643	1	1	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0020	2643	1	0	1	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0021	2643	1	0	1	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0022	2643	1	1	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R5_chr17_8873916_8970707	0/0	c0023	2643	1	1	0	0	0	0	copy fasta	PIK3R5	chr17	8873916	8970707
PIK3R6_chr17_8797722_8872674	1/1	c0001	2265	308	67	63	122	12	42	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0002	2265	8	7	1	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0003	2265	7	0	0	7	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0004	2265	4	4	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0005	2265	3	2	0	0	0	1	copy fasta	PIK3R6	chr17	8797722	8872674