JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIK3R6_chr17_8797722_8872674	0/0	c0006	2265	3	3	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0007	2265	2	0	0	2	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0008	2265	2	0	0	0	2	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0009	2265	2	0	0	2	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0010	2265	2	0	2	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0011	2265	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0012	2265	1	1	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0013	2265	1	0	1	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0014	2265	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0015	2265	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0016	2265	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0017	2265	1	1	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0018	2265	1	1	0	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0019	2265	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0020	2265	1	0	0	0	0	1	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0021	2265	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0022	2265	1	0	0	1	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIK3R6_chr17_8797722_8872674	0/0	c0023	2265	1	0	1	0	0	0	copy fasta	PIK3R6	chr17	8797722	8872674
PIKFYVE_chr2_208261255_208363746	0/1	c0001	6297	171	24	35	73	9	29	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0002	6297	28	8	13	4	2	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0003	6297	23	21	0	2	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0004	6297	21	9	2	7	0	3	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0005	6297	14	14	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0006	6297	8	6	1	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0007	6297	3	0	0	3	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0008	6297	2	0	1	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0009	6297	2	0	0	0	1	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	1/0	c0010	6297	2	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0011	6297	2	2	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0012	6297	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0013	6297	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0014	6297	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0015	6297	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0016	6297	1	0	1	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0017	6297	1	0	0	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0018	6297	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0019	6297	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0020	6297	1	0	0	1	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0021	6297	1	0	1	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0022	6297	1	0	0	0	0	1	copy fasta	PIKFYVE	chr2	208261255	208363746
PIKFYVE_chr2_208261255_208363746	0/0	c0023	6297	1	1	0	0	0	0	copy fasta	PIKFYVE	chr2	208261255	208363746
PILRA_chr7_100368487_100405096	0/1	c0001	912	207	74	23	66	12	31	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	1/0	c0002	912	145	6	35	86	4	13	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	c0003	912	5	5	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	c0004	912	3	3	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	c0005	912	2	2	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRA_chr7_100368487_100405096	0/0	c0006	912	2	2	0	0	0	0	copy fasta	PILRA	chr7	100368487	100405096
PILRB_chr7_100353117_100372831	1/1	c0001	684	347	81	58	154	12	40	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	c0002	681	29	9	4	6	4	6	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	c0003	681	2	2	0	0	0	0	copy fasta	PILRB	chr7	100353117	100372831