JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PILRB_chr7_100353117_100372831	0/0	c0004	684	1	0	1	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	c0005	684	1	0	0	1	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	c0006	684	1	0	0	1	0	0	copy fasta	PILRB	chr7	100353117	100372831
PILRB_chr7_100353117_100372831	0/0	c0007	681	1	0	1	0	0	0	copy fasta	PILRB	chr7	100353117	100372831
PIM1_chr6_37165152_37180428	1/1	c0001	942	404	87	70	183	14	48	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	c0002	942	5	5	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	c0003	942	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	c0004	942	1	1	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	c0005	942	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	c0006	942	1	0	0	1	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM1_chr6_37165152_37180428	0/0	c0007	942	1	1	0	0	0	0	copy fasta	PIM1	chr6	37165152	37180428
PIM2_chrX_48908182_48924024	1/1	c0001	936	275	75	49	119	7	23	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	c0002	936	1	0	0	1	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	c0003	936	1	0	1	0	0	0	copy fasta	PIM2	chrX	48908182	48924024
PIM2_chrX_48908182_48924024	0/0	c0004	936	1	0	0	0	0	1	copy fasta	PIM2	chrX	48908182	48924024
PIM3_chr22_49955772_49969072	0/1	c0001	981	221	46	47	102	9	16	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0002	981	75	12	12	35	5	11	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0003	981	74	15	11	28	4	16	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	1/0	c0004	981	37	9	7	15	0	5	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0005	981	10	9	1	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0006	981	2	2	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0007	981	2	2	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0008	981	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0009	981	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0010	981	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0011	981	1	1	0	0	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIM3_chr22_49955772_49969072	0/0	c0012	981	1	0	0	1	0	0	copy fasta	PIM3	chr22	49955772	49969072
PIMREG_chr17_6439455_6456469	1/1	c0001	717	287	61	61	113	18	32	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	c0002	717	22	17	3	0	0	2	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	c0003	717	1	0	0	1	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	c0004	717	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIMREG_chr17_6439455_6456469	0/0	c0005	717	1	1	0	0	0	0	copy fasta	PIMREG	chr17	6439455	6456469
PIN1_chr19_9830318_9854689	1/1	c0001	492	385	79	59	181	16	48	copy fasta	PIN1	chr19	9830318	9854689
PIN1_chr19_9830318_9854689	0/0	c0002	492	36	19	11	6	0	0	copy fasta	PIN1	chr19	9830318	9854689
PIN1_chr19_9830318_9854689	0/0	c0003	481	1	0	0	1	0	0	copy fasta	PIN1	chr19	9830318	9854689
PIN4_chrX_72176757_72203340	1/0	c0001	396	189	46	43	73	5	21	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/1	c0002	396	107	24	6	69	0	7	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	c0003	396	8	6	2	0	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	c0004	397	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	c0005	395	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340
PIN4_chrX_72176757_72203340	0/0	c0006	396	1	0	0	1	0	0	copy fasta	PIN4	chrX	72176757	72203340
PINK1_chr1_20628458_20656511	1/1	c0001	1746	251	57	50	111	7	24	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0002	1746	71	0	4	53	3	11	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0003	1746	47	0	11	30	1	5	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0004	1746	46	16	8	15	5	2	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0005	1746	9	9	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0006	1746	6	5	1	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0007	1746	4	4	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0008	1746	3	0	2	0	1	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0009	1746	2	2	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511