JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PINK1_chr1_20628458_20656511	0/0	c0010	1746	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0011	1746	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0012	1746	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0013	1746	1	0	1	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0014	1746	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0015	1746	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0016	1746	1	0	1	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0017	1746	1	0	0	0	1	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0018	1746	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0019	1746	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0020	1746	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0021	1746	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0022	1746	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0023	1746	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0024	1746	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0025	1746	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0026	1746	1	0	0	1	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0027	1746	1	1	0	0	0	0	copy fasta	PINK1	chr1	20628458	20656511
PINK1_chr1_20628458_20656511	0/0	c0028	1746	1	0	0	0	0	1	copy fasta	PINK1	chr1	20628458	20656511
PINLYP_chr19_43570801_43587098	1/0	c0001	615	312	66	50	158	11	26	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	c0002	615	103	13	19	52	5	14	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/1	c0003	615	28	10	11	0	2	4	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	c0004	615	5	5	0	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINLYP_chr19_43570801_43587098	0/0	c0005	615	2	2	0	0	0	0	copy fasta	PINLYP	chr19	43570801	43587098
PINX1_chr8_10759961_10844875	0/0	c0001	987	214	35	39	113	7	20	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0002	987	52	39	2	9	1	1	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0003	987	30	2	13	0	5	10	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0004	987	11	8	3	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0005	987	8	0	3	1	2	2	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0006	987	7	2	0	0	0	5	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0007	987	7	0	0	7	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0008	987	4	4	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0009	987	4	0	2	0	1	1	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0010	984	3	3	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0011	987	1	0	0	1	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0012	987	1	0	0	0	0	1	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0013	987	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0014	987	1	0	0	1	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0015	987	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0016	987	1	0	0	1	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0017	987	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0018	987	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0019	987	1	0	1	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0020	987	1	0	0	1	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0021	987	1	1	0	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PINX1_chr8_10759961_10844875	0/0	c0022	987	1	0	1	0	0	0	copy fasta	PINX1	chr8	10759961	10844875
PIP4K2A_chr10_22529854_22719578	1/0	c0001	1221	76	23	27	12	2	11	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0002	1221	41	29	4	1	1	6	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/1	c0003	1221	25	4	6	7	5	2	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0004	1221	14	3	4	2	0	5	copy fasta	PIP4K2A	chr10	22529854	22719578