JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIP4K2A_chr10_22529854_22719578	0/0	c0005	1221	14	11	1	2	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0006	1221	8	1	0	6	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0007	1221	8	8	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0008	1221	5	1	3	0	0	1	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0009	1221	4	3	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0010	1221	3	3	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0011	1221	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0012	1221	2	1	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0013	1221	2	2	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0014	1221	1	1	0	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2A_chr10_22529854_22719578	0/0	c0015	1221	1	0	1	0	0	0	copy fasta	PIP4K2A	chr10	22529854	22719578
PIP4K2B_chr17_38760691_38804556	0/1	c0001	1251	209	43	42	96	6	21	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	c0002	1251	133	13	18	79	4	19	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	c0003	1251	17	17	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	c0004	1251	10	10	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	c0005	1251	6	6	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	c0006	1251	3	3	0	0	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2B_chr17_38760691_38804556	0/0	c0007	1251	1	0	0	1	0	0	copy fasta	PIP4K2B	chr17	38760691	38804556
PIP4K2C_chr12_57586192_57608418	0/1	c0001	1266	177	55	34	57	12	18	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	c0002	1266	139	2	29	88	4	16	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	1/0	c0003	1266	29	25	3	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	c0004	1266	27	4	0	22	0	1	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	c0005	1266	7	6	1	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	c0006	1266	3	2	1	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	c0007	1266	2	2	0	0	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	c0008	1266	1	0	0	0	0	1	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4K2C_chr12_57586192_57608418	0/0	c0009	1266	1	0	0	1	0	0	copy fasta	PIP4K2C	chr12	57586192	57608418
PIP4P1_chr14_20452681_20466434	1/1	c0001	834	377	87	75	153	18	42	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	c0002	834	89	5	7	75	0	2	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	c0003	834	1	0	0	1	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P1_chr14_20452681_20466434	0/0	c0004	834	1	0	0	1	0	0	copy fasta	PIP4P1	chr14	20452681	20466434
PIP4P2_chr8_90988802_91045859	1/1	c0001	774	307	72	57	136	12	28	copy fasta	PIP4P2	chr8	90988802	91045859
PIP4P2_chr8_90988802_91045859	0/0	c0002	774	35	18	1	14	0	2	copy fasta	PIP4P2	chr8	90988802	91045859
PIP5K1A_chr1_151193552_151254531	0/1	c0001	1689	158	55	26	50	9	17	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	1/0	c0002	1689	143	30	26	63	7	16	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	c0003	1689	28	0	10	16	0	2	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	c0004	1689	3	3	0	0	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	c0005	1689	1	0	0	0	0	1	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1A_chr1_151193552_151254531	0/0	c0006	1689	1	0	0	1	0	0	copy fasta	PIP5K1A	chr1	151193552	151254531
PIP5K1B_chr9_68700240_69014176	1/0	c0001	1623	200	72	23	73	10	21	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	c0002	1623	9	6	2	0	0	1	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/1	c0003	1623	3	0	2	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	c0004	1623	2	0	0	2	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	c0005	1623	2	2	0	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	c0006	1623	2	0	0	2	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	c0007	1623	1	0	1	0	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1B_chr9_68700240_69014176	0/0	c0008	1623	1	0	0	1	0	0	copy fasta	PIP5K1B	chr9	68700240	69014176
PIP5K1C_chr19_3625183_3705468	0/1	c0001	2007	178	38	37	77	12	13	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	1/0	c0002	2007	125	32	22	38	6	26	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0003	2007	2	2	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468