JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIP5K1C_chr19_3625183_3705468	0/0	c0004	2007	2	2	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0005	2007	2	2	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0006	2007	2	2	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0007	2007	1	0	1	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0008	2007	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0009	1992	1	0	0	0	0	1	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0010	2007	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0011	2007	1	0	0	0	0	1	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0012	2007	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0013	2007	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0014	2007	1	0	1	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0015	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0016	2007	1	0	0	0	0	1	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0017	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0018	2007	1	0	1	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0019	2007	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0020	2007	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0021	2007	1	0	0	1	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0022	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0023	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0024	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0025	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0026	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5K1C_chr19_3625183_3705468	0/0	c0027	2007	1	1	0	0	0	0	copy fasta	PIP5K1C	chr19	3625183	3705468
PIP5KL1_chr9_127915881_127935777	0/1	c0001	1185	287	63	58	121	10	34	copy fasta	PIP5KL1	chr9	127915881	127935777
PIP5KL1_chr9_127915881_127935777	1/0	c0002	1185	110	26	5	66	0	12	copy fasta	PIP5KL1	chr9	127915881	127935777
PIP5KL1_chr9_127915881_127935777	0/0	c0003	1185	1	0	0	1	0	0	copy fasta	PIP5KL1	chr9	127915881	127935777
PIP5KL1_chr9_127915881_127935777	0/0	c0004	1185	1	1	0	0	0	0	copy fasta	PIP5KL1	chr9	127915881	127935777
PIP5KL1_chr9_127915881_127935777	0/0	c0005	1185	1	0	1	0	0	0	copy fasta	PIP5KL1	chr9	127915881	127935777
PIPOX_chr17_29038141_29062216	1/1	c0001	1173	366	72	75	157	14	46	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0002	1173	8	8	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0003	1173	4	0	0	4	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0004	1173	4	0	4	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0005	1173	3	3	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0006	1173	2	1	1	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0007	1173	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0010	1173	1	0	0	0	0	1	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0011	1173	1	0	0	1	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0012	1173	1	0	0	1	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0013	1173	1	0	0	0	0	1	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0014	1173	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIPOX_chr17_29038141_29062216	0/0	c0015	1173	1	1	0	0	0	0	copy fasta	PIPOX	chr17	29038141	29062216
PIP_chr7_143127077_143144739	1/1	c0001	441	329	94	69	106	11	47	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	c0002	441	4	0	2	0	1	1	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	c0003	441	3	3	0	0	0	0	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	c0004	441	2	0	0	2	0	0	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	c0005	441	1	1	0	0	0	0	copy fasta	PIP	chr7	143127077	143144739
PIP_chr7_143127077_143144739	0/0	c0006	441	1	0	1	0	0	0	copy fasta	PIP	chr7	143127077	143144739