JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PIRT_chr17_10817470_10843087	1/1	c0001	414	447	98	86	197	17	47	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	c0002	414	2	2	0	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	c0003	414	2	0	1	0	1	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	c0004	414	1	0	0	0	0	1	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	c0005	414	1	0	0	1	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIRT_chr17_10817470_10843087	0/0	c0006	414	1	0	1	0	0	0	copy fasta	PIRT	chr17	10817470	10843087
PIR_chrX_15379799_15498333	1/0	c0001	873	144	47	20	61	4	11	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/1	c0002	873	119	15	30	54	5	14	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	c0003	873	3	2	1	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	c0004	873	2	2	0	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	c0005	874	1	0	0	1	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	c0006	873	1	0	1	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	c0007	873	1	0	1	0	0	0	copy fasta	PIR	chrX	15379799	15498333
PIR_chrX_15379799_15498333	0/0	c0008	873	1	0	0	0	0	1	copy fasta	PIR	chrX	15379799	15498333
PISD_chr22_31613491_31667215	1/1	c0001	1230	307	79	58	124	13	31	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	c0002	1230	8	2	5	0	0	1	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	c0003	1230	6	0	5	0	1	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	c0004	1230	3	3	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	c0005	1230	2	2	0	0	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	c0006	1230	1	0	0	1	0	0	copy fasta	PISD	chr22	31613491	31667215
PISD_chr22_31613491_31667215	0/0	c0007	1230	1	0	0	1	0	0	copy fasta	PISD	chr22	31613491	31667215
PITHD1_chr1_23773418_23793232	1/1	c0001	636	356	71	77	162	18	26	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	c0002	636	12	10	2	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	c0003	636	3	2	1	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITHD1_chr1_23773418_23793232	0/0	c0004	636	1	1	0	0	0	0	copy fasta	PITHD1	chr1	23773418	23793232
PITPNA_chr17_1512718_1567792	1/1	c0001	813	352	86	53	162	9	40	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	c0002	813	12	2	3	2	3	2	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	c0003	813	2	0	2	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNA_chr17_1512718_1567792	0/0	c0004	813	2	2	0	0	0	0	copy fasta	PITPNA	chr17	1512718	1567792
PITPNB_chr22_27846669_27924256	1/1	c0001	816	363	86	54	172	16	33	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	c0002	816	2	0	0	2	0	0	copy fasta	PITPNB	chr22	27846669	27924256
PITPNB_chr22_27846669_27924256	0/0	c0003	816	1	0	0	0	0	1	copy fasta	PITPNB	chr22	27846669	27924256
PITPNC1_chr17_67372281_67702256	1/1	c0001	999	216	72	46	54	14	28	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	c0002	999	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNC1_chr17_67372281_67702256	0/0	c0003	999	1	1	0	0	0	0	copy fasta	PITPNC1	chr17	67372281	67702256
PITPNM1_chr11_67486768_67510363	0/1	c0001	3735	235	55	51	86	12	30	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	1/0	c0002	3735	26	21	0	4	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0003	3735	4	0	0	3	0	1	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0004	3735	4	4	0	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0005	3735	3	0	0	3	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0006	3735	3	0	0	3	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0007	3735	2	0	1	0	1	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0008	3735	2	0	2	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0009	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0010	3735	1	0	1	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0011	3735	1	0	1	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0012	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0013	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0014	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0015	3735	1	0	1	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363