JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PITPNM1_chr11_67486768_67510363	0/0	c0016	3735	1	0	0	0	1	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0017	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0018	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0019	3735	1	1	0	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0020	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0021	3735	1	0	0	0	0	1	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0022	3735	1	0	0	0	0	1	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0023	3735	1	0	0	0	0	1	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0024	3735	1	1	0	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0025	3735	1	1	0	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0026	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0027	3735	1	1	0	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0028	3735	1	0	0	1	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM1_chr11_67486768_67510363	0/0	c0029	3735	1	0	1	0	0	0	copy fasta	PITPNM1	chr11	67486768	67510363
PITPNM2_chr12_122978480_123156090	1/0	c0001	4050	159	41	22	76	3	16	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/1	c0002	4050	27	3	14	0	3	6	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0003	4041	16	16	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0004	4050	6	2	1	0	0	3	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0005	4050	2	2	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0006	4050	2	0	0	0	0	2	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0007	4050	1	0	0	1	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0008	4041	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0009	4050	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0010	4050	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0011	4050	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0012	4050	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0013	4050	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0014	4050	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0015	4050	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0016	4050	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0017	4050	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0018	4050	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0019	4050	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0020	4050	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0021	4050	1	0	0	1	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0022	4041	1	1	0	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0023	4050	1	0	0	0	0	1	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM2_chr12_122978480_123156090	0/0	c0024	4050	1	0	1	0	0	0	copy fasta	PITPNM2	chr12	122978480	123156090
PITPNM3_chr17_6446263_6561555	0/0	c0001	2925	82	29	13	26	5	9	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0002	2925	25	8	5	9	0	3	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0003	2925	22	1	4	10	0	7	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0004	2925	21	11	0	10	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0005	2925	12	0	3	3	3	3	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/1	c0006	2925	12	0	6	2	1	2	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0007	2925	10	9	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0008	2925	9	1	5	0	1	2	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0009	2925	3	3	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0010	2925	3	0	3	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	1/0	c0011	2925	2	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0012	2925	2	0	0	2	0	0	copy fasta	PITPNM3	chr17	6446263	6561555