JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PITPNM3_chr17_6446263_6561555	0/0	c0013	2925	2	1	0	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0014	2925	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0015	2925	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0016	2925	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0017	2925	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0018	2925	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0019	2925	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0020	2925	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0021	2925	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0022	2925	1	0	1	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0023	2925	1	0	0	1	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0024	2925	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0025	2925	1	0	0	0	1	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITPNM3_chr17_6446263_6561555	0/0	c0026	2925	1	1	0	0	0	0	copy fasta	PITPNM3	chr17	6446263	6561555
PITRM1_chr10_3132728_3177782	0/0	c0001	3139	78	3	10	55	2	8	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0002	3139	72	0	12	51	2	7	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	1/0	c0003	3114	58	16	14	17	2	8	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0004	3114	48	3	12	26	2	5	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0005	3139	29	7	1	15	0	6	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0006	3114	21	1	1	19	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0007	3114	11	4	1	6	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0008	3139	10	8	2	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0009	3139	7	1	2	3	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/1	c0010	3139	7	1	4	0	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0011	3139	6	5	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0012	3139	5	0	2	0	2	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0013	3139	5	1	3	0	1	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0014	3114	4	1	1	0	1	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0015	3139	4	1	3	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0016	3139	4	0	0	3	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0017	3139	4	3	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0018	3114	3	1	0	2	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0019	3139	3	0	0	0	2	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0020	3139	3	3	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0021	3139	3	3	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0022	3139	3	3	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0023	3114	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0024	3114	2	1	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0025	3114	2	0	2	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0026	3114	2	1	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0027	3114	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0028	3139	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0029	3139	2	0	0	2	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0030	3139	2	0	1	0	1	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0031	3139	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0032	3139	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0033	3139	2	0	0	0	0	2	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0034	3139	2	2	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0035	3139	2	0	2	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0036	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782